Wall clock time and date at job start Mon Mar 30 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 H 1.08995 * 109.47550 * 55.05906 * 3 2 1 5 5 C 1.50697 * 109.47231 * 175.06730 * 3 2 1 6 6 H 1.07991 * 120.00533 * 119.99909 * 5 3 2 7 7 C 1.37880 * 119.99501 * 299.99345 * 5 3 2 8 8 N 1.31511 * 120.00407 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00004 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46793 * 90.00149 * 9 7 5 11 11 H 1.48502 * 109.47375 * 210.00393 * 9 7 5 12 12 H 1.48498 * 109.47004 * 330.00578 * 9 7 5 13 13 N 1.46905 * 109.47009 * 295.06167 * 3 2 1 14 14 C 1.46902 * 111.00138 * 167.14904 * 13 3 2 15 15 C 1.46900 * 111.00150 * 291.10401 * 13 3 2 16 16 C 1.50700 * 109.47109 * 164.04944 * 15 13 3 17 17 N 1.31795 * 119.11920 * 269.72594 * 16 15 13 18 18 C 1.32338 * 120.81778 * 179.76394 * 17 16 15 19 19 C 1.38595 * 119.09977 * 0.50201 * 18 17 16 20 20 C 1.38595 * 118.40358 * 359.75574 * 19 18 17 21 21 N 1.31790 * 119.12199 * 90.00376 * 16 15 13 22 22 H 1.08997 * 109.47150 * 55.21045 * 1 2 3 23 23 H 1.08999 * 109.47014 * 175.21760 * 1 2 3 24 24 H 1.08998 * 109.46627 * 295.21420 * 1 2 3 25 25 H 1.08997 * 109.46882 * 239.99452 * 2 1 3 26 26 H 1.09005 * 109.47139 * 119.99855 * 2 1 3 27 27 H 0.96997 * 120.00378 * 179.97438 * 8 7 5 28 28 H 1.08991 * 109.47286 * 183.95474 * 14 13 3 29 29 H 1.09000 * 109.46722 * 303.95817 * 14 13 3 30 30 H 1.08999 * 109.46759 * 63.95029 * 14 13 3 31 31 H 1.09001 * 109.47382 * 284.05175 * 15 13 3 32 32 H 1.08999 * 109.46904 * 44.04613 * 15 13 3 33 33 H 1.07996 * 120.44889 * 180.23633 * 18 17 16 34 34 H 1.08003 * 120.79744 * 179.77653 * 19 18 17 35 35 H 1.08000 * 120.45391 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9813 0.8424 5 6 3.5420 1.4442 0.1222 6 1 4.1465 1.8891 -0.6544 7 6 4.1445 0.8780 1.2255 8 7 3.4085 0.3359 2.1711 9 14 6.0064 0.8795 1.3768 10 1 6.4449 2.1122 2.0792 11 1 6.4413 -0.3119 2.1494 12 1 6.6131 0.8394 0.0220 13 7 1.6501 2.0997 -1.2546 14 6 1.8480 3.5529 -1.1714 15 6 2.3821 1.5332 -2.3953 16 6 1.6997 1.9322 -3.6783 17 7 0.7610 1.1517 -4.1751 18 6 0.1367 1.4719 -5.2972 19 6 0.4894 2.6395 -5.9552 20 6 1.4846 3.4316 -5.4048 21 7 2.0612 3.0494 -4.2766 22 1 -0.3633 0.5863 -0.8439 23 1 -0.3633 -1.0241 -0.0857 24 1 -0.3632 0.4378 0.9298 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8324 -0.0627 2.9471 28 1 1.4865 4.0219 -2.0864 29 1 1.2953 3.9465 -0.3183 30 1 2.9093 3.7685 -1.0474 31 1 3.4045 1.9111 -2.3949 32 1 2.3966 0.4463 -2.3142 33 1 -0.6342 0.8298 -5.6969 34 1 0.0003 2.9254 -6.8748 35 1 1.7853 4.3486 -5.8897 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718920696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:27 Heat of formation + Delta-G solvation = 35.005793 kcal Electronic energy + Delta-G solvation = -16873.530486 eV Core-core repulsion = 14292.168812 eV Total energy + Delta-G solvation = -2581.361674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87974 -38.97255 -34.99717 -34.56428 -33.40880 -32.65783 -28.79272 -28.65402 -25.97119 -25.29137 -24.19605 -23.00754 -20.89937 -18.66650 -18.37530 -17.60559 -16.97566 -16.23109 -16.16776 -15.77464 -15.19984 -14.91578 -14.55997 -14.30965 -13.94769 -13.62202 -13.27693 -13.13674 -12.85376 -12.71186 -12.53548 -12.41395 -11.97890 -11.74119 -11.60242 -11.53476 -11.30114 -11.01024 -10.50473 -10.30466 -10.08051 -9.01903 -8.03408 -6.25268 0.02611 0.30605 1.38499 1.40508 1.49501 2.41423 2.78784 3.06198 3.16968 3.37545 3.67084 3.85784 4.23957 4.33316 4.44559 4.49453 4.61136 4.67240 4.76705 4.84904 4.91592 4.94412 5.02144 5.07475 5.23793 5.44531 5.50154 5.56949 5.62998 5.79087 6.02352 6.13708 6.22275 6.36988 6.55373 6.92787 7.29057 7.45367 8.93035 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.007348 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.522382 B = 3809.394780 C = 4273.794569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.556 4.556 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.528 5.528 14 C 0.046 3.954 15 C 0.138 3.862 16 C 0.320 3.680 17 N -0.533 5.533 18 C 0.131 3.869 19 C -0.218 4.218 20 C 0.131 3.869 21 N -0.542 5.542 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.033 0.967 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 3.998 -15.137 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.028 0.972 5 C -0.595 4.595 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.252 5.252 14 C -0.103 4.103 15 C 0.008 3.992 16 C 0.052 3.948 17 N -0.248 5.248 18 C -0.034 4.034 19 C -0.239 4.239 20 C -0.034 4.034 21 N -0.258 5.258 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.215 0.785 34 H 0.207 0.793 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.960 3.547 -14.181 15.786 hybrid contribution 1.564 0.344 -0.074 1.603 sum -4.395 3.890 -14.255 15.416 Atomic orbital electron populations 1.21542 0.96471 0.99920 1.00215 1.21422 0.94410 0.97999 1.00294 1.19106 0.92163 0.91729 0.85472 0.97215 1.21966 0.93792 1.38093 1.05628 0.93149 1.25583 1.01819 0.94738 0.95415 1.69990 1.36319 1.38681 1.09775 0.85739 0.81377 0.77605 0.78015 1.20356 1.20640 1.19810 1.62318 1.55320 1.03783 1.03735 1.22103 0.98765 0.88862 1.00548 1.20419 0.93572 0.99924 0.85277 1.22998 0.89987 0.86631 0.95197 1.68259 1.08464 1.34356 1.13752 1.23950 0.95720 0.95093 0.88643 1.23294 1.00004 0.96546 1.04082 1.23920 0.90565 0.99492 0.89447 1.68285 1.29737 1.16473 1.11263 0.93007 0.93506 0.94801 0.95142 0.91554 0.92805 0.92065 0.92715 0.96671 0.94093 0.90173 0.78511 0.79268 0.78457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 9.86 71.98 0.71 -4.55 16 2 C -0.10 -5.08 5.22 30.59 0.16 -4.92 16 3 C 0.22 11.43 1.69 44.17 0.07 11.50 16 4 H 0.01 0.57 7.96 -2.39 -0.02 0.55 16 5 C -0.56 -30.57 7.28 25.60 0.19 -30.39 16 6 H 0.05 2.80 5.99 -2.91 -0.02 2.78 16 7 C 0.02 1.37 5.29 84.66 0.45 1.81 16 8 N -0.91 -52.07 11.29 21.45 0.24 -51.82 16 9 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.53 -23.82 4.01 -906.06 -3.63 -27.46 16 14 C 0.05 1.93 9.13 127.69 1.17 3.10 16 15 C 0.14 5.96 4.45 85.56 0.38 6.34 16 16 C 0.32 11.84 6.61 138.75 0.92 12.76 16 17 N -0.53 -17.93 10.33 -187.85 -1.94 -19.87 16 18 C 0.13 2.96 11.31 84.70 0.96 3.92 16 19 C -0.22 -3.77 10.17 22.44 0.23 -3.54 16 20 C 0.13 2.89 11.31 84.70 0.96 3.84 16 21 N -0.54 -17.77 9.37 -187.84 -1.76 -19.53 16 22 H 0.05 2.18 7.62 -2.39 -0.02 2.16 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.03 1.49 6.24 -2.39 -0.01 1.47 16 26 H 0.07 3.64 5.95 -2.38 -0.01 3.62 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.06 2.36 6.77 -2.39 -0.02 2.34 16 29 H 0.05 2.24 8.03 -2.39 -0.02 2.22 16 30 H 0.01 0.66 7.41 -2.39 -0.02 0.64 16 31 H 0.04 1.90 6.61 -2.39 -0.02 1.88 16 32 H 0.08 3.67 6.04 -2.39 -0.01 3.66 16 33 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -65.96 285.59 2.20 -63.76 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.07 Total: 9.02 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.19 Total: -0.12 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -7.09 Total: -118.68 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.96 2.20 -63.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718920696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.767 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds