Wall clock time and date at job start Mon Mar 30 2020 17:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 H 1.08997 * 109.47377 * 55.00444 * 3 2 1 5 5 C 1.50707 * 109.46861 * 174.99936 * 3 2 1 6 6 H 1.08002 * 119.99523 * 120.00423 * 5 3 2 7 7 C 1.37877 * 120.00095 * 300.00129 * 5 3 2 8 8 N 1.31509 * 119.99968 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99829 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46937 * 89.99984 * 9 7 5 11 11 H 1.48499 * 109.47020 * 209.99850 * 9 7 5 12 12 H 1.48493 * 109.47218 * 330.00220 * 9 7 5 13 13 N 1.46493 * 109.47535 * 294.99982 * 3 2 1 14 14 C 1.38545 * 120.00003 * 84.99570 * 13 3 2 15 15 N 1.32988 * 120.53094 * 0.03248 * 14 13 3 16 16 C 1.31749 * 120.69212 * 179.97438 * 15 14 13 17 17 N 1.31793 * 121.82843 * 359.97438 * 16 15 14 18 18 C 1.32554 * 121.00960 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.39836 * 179.97438 * 18 17 16 20 20 C 1.38113 * 119.20036 * 0.02562 * 18 17 16 21 21 C 1.50696 * 120.83378 * 180.02562 * 20 18 17 22 22 H 1.08996 * 109.46749 * 300.00289 * 1 2 3 23 23 H 1.08998 * 109.46726 * 59.99577 * 1 2 3 24 24 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47240 * 240.00282 * 2 1 3 26 26 H 1.08993 * 109.47359 * 120.00111 * 2 1 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 8 7 5 28 28 H 0.97002 * 120.00576 * 265.00415 * 13 3 2 29 29 H 1.07992 * 119.09083 * 179.97438 * 16 15 14 30 30 H 1.08997 * 109.47043 * 90.00203 * 19 18 17 31 31 H 1.09002 * 109.46921 * 209.99828 * 19 18 17 32 32 H 1.09010 * 109.47055 * 329.99886 * 19 18 17 33 33 H 1.09001 * 109.47504 * 90.00037 * 21 20 18 34 34 H 1.09007 * 109.47280 * 209.99870 * 21 20 18 35 35 H 1.08994 * 109.47052 * 329.99656 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8801 1.3811 10 1 6.4429 2.1130 2.0836 11 1 6.4391 -0.3110 2.1545 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0976 -1.2517 14 6 0.4011 2.6803 -1.3701 15 7 -0.4563 2.6517 -0.3539 16 6 -1.6469 3.2052 -0.4629 17 7 -2.0359 3.8049 -1.5701 18 6 -1.2371 3.8751 -2.6256 19 6 -1.6962 4.5637 -3.8850 20 6 0.0207 3.3087 -2.5575 21 6 0.9591 3.3676 -3.7352 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8293 -0.0619 2.9494 28 1 2.2719 2.1233 -1.9978 29 1 -2.3229 3.1665 0.3784 30 1 -1.4262 5.6188 -3.8413 31 1 -1.2163 4.1013 -4.7475 32 1 -2.7783 4.4690 -3.9770 33 1 1.5667 4.2703 -3.6710 34 1 1.6079 2.4917 -3.7270 35 1 0.3816 3.3833 -4.6594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882191012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:40 Heat of formation + Delta-G solvation = 38.900308 kcal Electronic energy + Delta-G solvation = -16863.762927 eV Core-core repulsion = 14282.570132 eV Total energy + Delta-G solvation = -2581.192795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48805 -36.58936 -34.16491 -33.52916 -31.59265 -30.29722 -28.70509 -27.20421 -26.09232 -23.11267 -22.17180 -21.49241 -19.72352 -17.67635 -16.87198 -15.94032 -15.00249 -14.84975 -14.34797 -13.90805 -13.82328 -13.30322 -12.83850 -12.77363 -12.68365 -12.41972 -12.15056 -11.79135 -11.53522 -11.27895 -10.99581 -10.92314 -10.51510 -10.23416 -10.09719 -10.02269 -9.59689 -9.08317 -8.87974 -8.53934 -8.37000 -7.12758 -6.15922 -4.25252 1.58936 2.04022 3.21929 3.28897 3.30551 3.99588 4.33508 4.46652 4.61189 4.89392 5.15575 5.20979 5.33902 5.45881 5.61604 5.75598 5.81502 5.88746 6.02670 6.25885 6.36751 6.37467 6.43544 6.61441 6.92460 7.02660 7.16132 7.34752 7.48552 7.57412 7.64239 7.85268 8.06705 8.23702 8.52043 8.77075 9.04449 9.41281 10.89293 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036054 B = 0.006926 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.429801 B = 4041.631394 C = 4466.739685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.448 3.552 15 N -0.562 5.562 16 C 0.326 3.674 17 N -0.584 5.584 18 C 0.189 3.811 19 C -0.102 4.102 20 C -0.280 4.280 21 C -0.092 4.092 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.020 0.980 25 H 0.028 0.972 26 H 0.100 0.900 27 H 0.265 0.735 28 H 0.399 0.601 29 H 0.184 0.816 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 4.452 -9.131 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.308 5.308 14 C 0.201 3.799 15 N -0.287 5.287 16 C 0.036 3.964 17 N -0.306 5.306 18 C 0.047 3.953 19 C -0.159 4.159 20 C -0.292 4.292 21 C -0.150 4.150 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.201 0.799 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.381 4.184 -7.994 11.051 hybrid contribution 1.793 -0.092 -0.680 1.920 sum -4.588 4.091 -8.674 10.631 Atomic orbital electron populations 1.21818 0.98390 0.97765 1.00994 1.21935 0.92664 0.99837 1.02132 1.18871 0.94047 0.89172 0.80720 0.92681 1.21228 0.90787 1.39152 1.06348 0.92257 1.24853 0.98583 0.94717 0.95350 1.69883 1.35129 1.37494 1.09321 0.86464 0.84864 0.77681 0.78199 1.20548 1.21015 1.19891 1.45568 1.10700 1.55828 1.18672 1.18550 0.87153 0.86170 0.87980 1.68256 1.04819 1.24824 1.30815 1.24482 0.90270 0.87470 0.94190 1.68162 1.37194 1.23846 1.01365 1.20997 0.88780 0.91392 0.94128 1.20704 1.02265 0.99957 0.92989 1.20612 0.99185 1.11372 0.98040 1.20452 0.97706 1.01807 0.95035 0.92552 0.94940 0.96081 0.95350 0.88226 0.92531 0.76488 0.79914 0.90508 0.90638 0.90718 0.91830 0.92166 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.45 37.16 0.31 -2.54 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.72 2.25 -69.08 -0.16 6.57 16 4 H 0.06 1.54 7.57 -51.93 -0.39 1.14 16 5 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.68 -14.21 5.06 -54.91 -0.28 -14.49 16 14 C 0.45 8.89 6.03 -154.78 -0.93 7.96 16 15 N -0.56 -11.42 6.61 -13.81 -0.09 -11.51 16 16 C 0.33 5.78 12.28 -92.19 -1.13 4.65 16 17 N -0.58 -10.09 10.37 -10.88 -0.11 -10.20 16 18 C 0.19 3.00 6.82 -82.33 -0.56 2.44 16 19 C -0.10 -1.16 9.83 36.01 0.35 -0.81 16 20 C -0.28 -4.69 5.93 -104.15 -0.62 -5.31 16 21 C -0.09 -1.20 9.26 36.00 0.33 -0.87 16 22 H 0.06 1.25 7.69 -51.93 -0.40 0.85 16 23 H 0.03 0.69 5.59 -51.93 -0.29 0.40 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 7.56 6.67 -40.82 -0.27 7.28 16 29 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.72 6.07 -51.93 -0.32 0.41 16 32 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 35 H 0.07 0.71 6.07 -51.93 -0.32 0.39 16 LS Contribution 281.61 15.07 4.24 4.24 Total: -1.00 -28.78 281.61 -8.29 -37.07 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.72 Total: 6.78 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.94 Total: -3.71 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.14 Total: -59.84 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.78 -8.29 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882191012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.975 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds