Wall clock time and date at job start Mon Mar 30 2020 17:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 H 1.08997 * 109.47377 * 55.00444 * 3 2 1 5 5 C 1.50707 * 109.46861 * 174.99936 * 3 2 1 6 6 H 1.08002 * 119.99523 * 120.00423 * 5 3 2 7 7 C 1.37877 * 120.00095 * 300.00129 * 5 3 2 8 8 N 1.31509 * 119.99968 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99829 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46937 * 89.99984 * 9 7 5 11 11 H 1.48499 * 109.47020 * 209.99850 * 9 7 5 12 12 H 1.48493 * 109.47218 * 330.00220 * 9 7 5 13 13 N 1.46493 * 109.47535 * 294.99982 * 3 2 1 14 14 C 1.38545 * 120.00003 * 84.99570 * 13 3 2 15 15 N 1.32988 * 120.53094 * 0.03248 * 14 13 3 16 16 C 1.31749 * 120.69212 * 179.97438 * 15 14 13 17 17 N 1.31793 * 121.82843 * 359.97438 * 16 15 14 18 18 C 1.32554 * 121.00960 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.39836 * 179.97438 * 18 17 16 20 20 C 1.38113 * 119.20036 * 0.02562 * 18 17 16 21 21 C 1.50696 * 120.83378 * 180.02562 * 20 18 17 22 22 H 1.08996 * 109.46749 * 300.00289 * 1 2 3 23 23 H 1.08998 * 109.46726 * 59.99577 * 1 2 3 24 24 H 1.09000 * 109.46943 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47240 * 240.00282 * 2 1 3 26 26 H 1.08993 * 109.47359 * 120.00111 * 2 1 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 8 7 5 28 28 H 0.97002 * 120.00576 * 265.00415 * 13 3 2 29 29 H 1.07992 * 119.09083 * 179.97438 * 16 15 14 30 30 H 1.08997 * 109.47043 * 90.00203 * 19 18 17 31 31 H 1.09002 * 109.46921 * 209.99828 * 19 18 17 32 32 H 1.09010 * 109.47055 * 329.99886 * 19 18 17 33 33 H 1.09001 * 109.47504 * 90.00037 * 21 20 18 34 34 H 1.09007 * 109.47280 * 209.99870 * 21 20 18 35 35 H 1.08994 * 109.47052 * 329.99656 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1434 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8801 1.3811 10 1 6.4429 2.1130 2.0836 11 1 6.4391 -0.3110 2.1545 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0976 -1.2517 14 6 0.4011 2.6803 -1.3701 15 7 -0.4563 2.6517 -0.3539 16 6 -1.6469 3.2052 -0.4629 17 7 -2.0359 3.8049 -1.5701 18 6 -1.2371 3.8751 -2.6256 19 6 -1.6962 4.5637 -3.8850 20 6 0.0207 3.3087 -2.5575 21 6 0.9591 3.3676 -3.7352 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8293 -0.0619 2.9494 28 1 2.2719 2.1233 -1.9978 29 1 -2.3229 3.1665 0.3784 30 1 -1.4262 5.6188 -3.8413 31 1 -1.2163 4.1013 -4.7475 32 1 -2.7783 4.4690 -3.9770 33 1 1.5667 4.2703 -3.6710 34 1 1.6079 2.4917 -3.7270 35 1 0.3816 3.3833 -4.6594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882191012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:39 Heat of formation + Delta-G solvation = 23.058967 kcal Electronic energy + Delta-G solvation = -16864.449859 eV Core-core repulsion = 14282.570132 eV Total energy + Delta-G solvation = -2581.879727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.86483 -38.25908 -35.41853 -35.25068 -33.41126 -31.90220 -29.79796 -28.90206 -27.50608 -24.98705 -23.48191 -22.97095 -21.48560 -19.33051 -18.35523 -17.67445 -16.74706 -16.35883 -15.70998 -15.56052 -15.14164 -14.77026 -14.52280 -13.97466 -13.82555 -13.64981 -13.49286 -13.32822 -13.14509 -12.85621 -12.72160 -12.55836 -12.20398 -12.06421 -11.74377 -11.53674 -11.34569 -10.97638 -10.51392 -10.26267 -9.82533 -8.66570 -8.16750 -6.33418 0.27782 0.62832 1.42615 1.43148 1.53277 2.33439 2.58818 3.09112 3.13640 3.43652 3.60312 3.95761 4.19573 4.31100 4.53478 4.58588 4.65681 4.72620 4.77436 4.80690 4.90629 5.08597 5.11323 5.18502 5.24898 5.28699 5.47264 5.55988 5.62020 5.84025 5.86623 6.03512 6.21509 6.50547 6.75197 7.02244 7.36511 7.61829 8.88043 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036054 B = 0.006926 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.429801 B = 4041.631394 C = 4466.739685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C 0.287 3.713 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.264 1.264 13 N -0.688 5.688 14 C 0.423 3.577 15 N -0.595 5.595 16 C 0.315 3.685 17 N -0.586 5.586 18 C 0.181 3.819 19 C -0.098 4.098 20 C -0.279 4.279 21 C -0.091 4.091 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.206 0.794 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 5.255 -11.212 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.590 4.590 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.188 1.188 13 N -0.318 5.318 14 C 0.178 3.822 15 N -0.320 5.320 16 C 0.025 3.975 17 N -0.307 5.307 18 C 0.039 3.961 19 C -0.154 4.154 20 C -0.290 4.290 21 C -0.148 4.148 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.222 0.778 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.440 5.011 -10.109 12.992 hybrid contribution 1.684 -0.264 -0.066 1.705 sum -4.756 4.748 -10.175 12.194 Atomic orbital electron populations 1.21618 0.96636 0.98530 1.00421 1.21777 0.94132 0.99333 1.00625 1.18377 0.93068 0.89014 0.81157 0.96930 1.21580 0.91873 1.39003 1.06585 0.91816 1.25677 1.02987 0.94363 0.95043 1.70023 1.36882 1.38210 1.09788 0.85443 0.79531 0.77502 0.78450 1.20422 1.20796 1.18837 1.45181 1.11747 1.57138 1.17687 1.18873 0.86785 0.87190 0.89337 1.68211 1.05898 1.25975 1.31928 1.24953 0.89926 0.87325 0.95283 1.68269 1.37484 1.23371 1.01621 1.21800 0.88307 0.90765 0.95214 1.20835 1.02895 1.00513 0.91200 1.21000 1.00128 1.09902 0.97928 1.20547 0.97446 1.02174 0.94650 0.93803 0.94744 0.94484 0.95319 0.90995 0.92572 0.75584 0.77768 0.88837 0.88250 0.90023 0.90740 0.92457 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 8.45 71.98 0.61 -4.40 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.69 16 3 C 0.29 14.52 2.25 44.25 0.10 14.62 16 4 H 0.01 0.75 7.57 -2.39 -0.02 0.73 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -51.50 11.29 21.45 0.24 -51.26 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.69 -28.99 5.06 -327.63 -1.66 -30.65 16 14 C 0.42 16.73 6.03 133.16 0.80 17.53 16 15 N -0.59 -24.46 6.61 -197.62 -1.31 -25.77 16 16 C 0.31 11.05 12.28 180.90 2.22 13.27 16 17 N -0.59 -19.37 10.37 -188.34 -1.95 -21.32 16 18 C 0.18 5.33 6.82 42.42 0.29 5.62 16 19 C -0.10 -1.84 9.83 71.24 0.70 -1.14 16 20 C -0.28 -8.82 5.93 -19.56 -0.12 -8.94 16 21 C -0.09 -2.09 9.26 71.23 0.66 -1.43 16 22 H 0.04 1.99 7.69 -2.39 -0.02 1.98 16 23 H 0.03 1.47 5.59 -2.39 -0.01 1.46 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 3.94 5.95 -2.39 -0.01 3.93 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.41 15.35 6.67 -92.71 -0.62 14.73 16 29 H 0.21 5.88 8.06 -2.91 -0.02 5.85 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.41 6.07 -2.39 -0.01 1.40 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.37 6.68 -2.38 -0.02 1.35 16 35 H 0.10 1.64 6.07 -2.39 -0.01 1.62 16 Total: -1.00 -62.97 281.61 3.93 -59.03 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.48 Total: 23.95 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.10 Total: 1.85 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -4.68 Total: -128.99 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.97 3.93 -59.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882191012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.092 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds