Wall clock time and date at job start Mon Mar 30 2020 17:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47260 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99751 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46681 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00275 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99680 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99762 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46855 * 89.99948 * 15 13 11 17 17 H 1.48493 * 109.47111 * 209.99885 * 15 13 11 18 18 H 1.48499 * 109.47170 * 330.00181 * 15 13 11 19 19 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 20 20 C 1.31970 * 121.62524 * 359.97438 * 19 5 4 21 21 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 22 22 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 23 23 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 24 24 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 25 25 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 26 26 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 28 28 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 29 29 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 30 30 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 31 31 H 1.00898 * 111.00179 * 303.95429 * 9 8 7 32 32 H 1.08999 * 109.46822 * 299.99789 * 10 9 8 33 33 H 1.08996 * 109.47040 * 60.00422 * 10 9 8 34 34 H 0.97004 * 120.00004 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.56936 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6818 1.9911 -0.0051 10 6 10.1216 1.6996 -0.0062 11 6 10.8958 2.9926 -0.0055 12 1 10.3707 3.9364 -0.0048 13 6 12.2744 2.9706 -0.0069 14 7 12.9137 1.8214 -0.0083 15 14 13.2341 4.5734 -0.0068 16 1 13.4897 4.9971 1.3934 17 1 14.5279 4.3756 -0.7082 18 1 12.4474 5.6214 -0.7053 19 7 3.5237 -1.2034 -0.0026 20 6 2.2040 -1.1913 -0.0021 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.6863 2.1440 -0.0004 25 1 4.1676 2.0674 -0.0050 26 1 6.0656 -1.0016 -0.0038 27 1 6.1633 1.6771 -0.8930 28 1 6.1647 1.6769 0.8870 29 1 8.1335 0.1688 0.8845 30 1 8.1315 0.1693 -0.8955 31 1 8.4309 2.5791 -0.7858 32 1 10.3763 1.1236 0.8833 33 1 10.3752 1.1244 -0.8967 34 1 13.8836 1.8059 -0.0097 35 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905602763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:47 Heat of formation + Delta-G solvation = 28.190332 kcal Electronic energy + Delta-G solvation = -15277.833446 eV Core-core repulsion = 12696.176232 eV Total energy + Delta-G solvation = -2581.657215 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26073 -36.87717 -34.96276 -33.17836 -32.39759 -31.23070 -28.85754 -26.50458 -25.11945 -23.84250 -22.15912 -21.36032 -21.21590 -17.67286 -16.84673 -16.36347 -15.48098 -15.10693 -14.84616 -14.56004 -14.32347 -14.20799 -13.64791 -13.07353 -13.00988 -12.86087 -12.53530 -12.45581 -11.81807 -11.67709 -11.27452 -11.08656 -10.73228 -10.69272 -9.99756 -9.97104 -9.73915 -9.45185 -9.25984 -8.53234 -7.60402 -7.45469 -6.08212 -4.10769 1.26447 1.40442 3.14921 3.29747 3.35566 3.39185 3.87677 4.39373 4.59706 4.75880 4.92108 4.98613 5.10390 5.12585 5.27450 5.28529 5.43473 5.46077 5.58211 5.69714 5.75649 5.78160 6.00057 6.17787 6.19095 6.29402 6.58296 7.02954 7.14370 7.32496 7.59706 7.70840 8.04508 8.18078 8.26008 8.49725 8.97871 9.54426 11.02963 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.075547 B = 0.003272 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.541743 B = 8554.723519 C = 8892.184896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.213 4.213 3 C -0.034 4.034 4 C -0.236 4.236 5 C 0.403 3.597 6 N -0.721 5.721 7 C 0.129 3.871 8 C 0.049 3.951 9 N -0.686 5.686 10 C 0.195 3.805 11 C -0.517 4.517 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.901 3.099 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.547 5.547 20 C 0.149 3.851 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.404 0.596 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.331 0.669 32 H 0.029 0.971 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.725 -3.268 -0.829 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.218 4.218 3 C -0.059 4.059 4 C -0.261 4.261 5 C 0.167 3.833 6 N -0.353 5.353 7 C 0.004 3.996 8 C -0.081 4.081 9 N -0.317 5.317 10 C 0.068 3.932 11 C -0.555 4.555 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.729 3.271 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 N -0.264 5.264 20 C -0.010 4.010 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.239 0.761 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.147 0.853 32 H 0.047 0.953 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.976 -3.858 -0.141 21.328 hybrid contribution 0.595 0.914 -0.898 1.413 sum -20.381 -2.944 -1.039 20.618 Atomic orbital electron populations 1.20530 0.90736 1.02369 1.01782 1.20540 0.97161 0.94111 1.09978 1.21195 0.93245 0.97888 0.93608 1.21463 0.95310 0.97617 1.11691 1.18384 0.85429 0.89272 0.90231 1.44550 1.01458 1.09601 1.79677 1.21427 0.91034 0.85398 1.01708 1.21985 0.90973 0.94479 1.00690 1.60615 1.08123 1.13899 1.49076 1.19576 0.80606 0.97014 0.95978 1.21164 0.90927 0.92755 1.50682 0.91844 1.25003 0.97776 0.96591 0.95225 1.69959 1.08314 1.24740 1.50671 0.86451 0.79150 0.83340 0.78179 1.20552 1.21267 1.19799 1.67158 1.08668 1.29623 1.20996 1.22234 0.88418 0.97296 0.93011 0.91854 0.91856 0.91989 0.85274 0.84894 0.76066 0.92219 0.91007 0.91041 0.95608 0.85308 0.95264 0.99392 0.92816 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.03 36.01 0.36 -0.30 16 2 C -0.21 -2.14 5.90 -104.46 -0.62 -2.76 16 3 C -0.03 -0.35 9.85 -39.32 -0.39 -0.74 16 4 C -0.24 -2.89 9.33 -39.22 -0.37 -3.25 16 5 C 0.40 5.58 7.65 -155.03 -1.19 4.39 16 6 N -0.72 -9.73 5.73 -60.42 -0.35 -10.07 16 7 C 0.13 1.77 5.15 -4.04 -0.02 1.75 16 8 C 0.05 0.83 5.80 -3.83 -0.02 0.80 16 9 N -0.69 -14.16 6.49 -115.06 -0.75 -14.90 16 10 C 0.19 5.04 5.44 -4.97 -0.03 5.01 16 11 C -0.52 -14.49 9.32 -34.44 -0.32 -14.81 16 12 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.55 -7.61 10.39 -12.44 -0.13 -7.74 16 20 C 0.15 1.68 10.85 -17.57 -0.19 1.49 16 21 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 22 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 23 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 24 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.13 1.50 6.71 -52.49 -0.35 1.15 16 26 H 0.40 5.29 8.60 -40.82 -0.35 4.94 16 27 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 28 H 0.07 1.00 7.93 -51.92 -0.41 0.59 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.33 6.41 8.72 -39.29 -0.34 6.07 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -30.84 300.54 -9.06 -39.90 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.21 Total: 4.71 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.87 Total: -6.94 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.49 Total: -58.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.84 -9.06 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905602763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.092 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds