Wall clock time and date at job start Mon Mar 30 2020 17:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38874 * 120.33853 * 2 1 4 4 C 1.38305 * 118.50806 * 180.02562 * 3 2 1 5 5 C 1.39143 * 119.09428 * 0.02562 * 4 3 2 6 6 N 1.38992 * 119.70430 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00445 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47623 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47260 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99751 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46681 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00275 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99680 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99762 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46855 * 89.99948 * 15 13 11 17 17 H 1.48493 * 109.47111 * 209.99885 * 15 13 11 18 18 H 1.48499 * 109.47170 * 330.00181 * 15 13 11 19 19 N 1.32396 * 120.58609 * 0.02562 * 5 4 3 20 20 C 1.31970 * 121.62524 * 359.97438 * 19 5 4 21 21 H 1.09007 * 109.46936 * 89.99993 * 1 2 3 22 22 H 1.08993 * 109.47747 * 209.99861 * 1 2 3 23 23 H 1.08998 * 109.46982 * 330.00531 * 1 2 3 24 24 H 1.08001 * 120.74845 * 359.97438 * 3 2 1 25 25 H 1.07994 * 120.45256 * 179.72768 * 4 3 2 26 26 H 0.97002 * 119.99871 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47011 * 300.00902 * 7 6 5 28 28 H 1.09010 * 109.46557 * 60.00012 * 7 6 5 29 29 H 1.09005 * 109.46709 * 300.00119 * 8 7 6 30 30 H 1.09000 * 109.47098 * 59.99825 * 8 7 6 31 31 H 1.00898 * 111.00179 * 303.95429 * 9 8 7 32 32 H 1.08999 * 109.46822 * 299.99789 * 10 9 8 33 33 H 1.08996 * 109.47040 * 60.00422 * 10 9 8 34 34 H 0.97004 * 120.00004 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.56936 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1544 -0.0005 5 6 4.2282 -0.0825 -0.0016 6 7 5.6169 -0.1417 -0.0027 7 6 6.4028 1.0947 -0.0033 8 6 7.8938 0.7513 -0.0051 9 7 8.6818 1.9911 -0.0051 10 6 10.1216 1.6996 -0.0062 11 6 10.8958 2.9926 -0.0055 12 1 10.3707 3.9364 -0.0048 13 6 12.2744 2.9706 -0.0069 14 7 12.9137 1.8214 -0.0083 15 14 13.2341 4.5734 -0.0068 16 1 13.4897 4.9971 1.3934 17 1 14.5279 4.3756 -0.7082 18 1 12.4474 5.6214 -0.7053 19 7 3.5237 -1.2034 -0.0026 20 6 2.2040 -1.1913 -0.0021 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.6863 2.1440 -0.0004 25 1 4.1676 2.0674 -0.0050 26 1 6.0656 -1.0016 -0.0038 27 1 6.1633 1.6771 -0.8930 28 1 6.1647 1.6769 0.8870 29 1 8.1335 0.1688 0.8845 30 1 8.1315 0.1693 -0.8955 31 1 8.4309 2.5791 -0.7858 32 1 10.3763 1.1236 0.8833 33 1 10.3752 1.1244 -0.8967 34 1 13.8836 1.8059 -0.0097 35 1 1.6625 -2.1258 -0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905602763.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:45 Heat of formation + Delta-G solvation = 6.933811 kcal Electronic energy + Delta-G solvation = -15278.755198 eV Core-core repulsion = 12696.176232 eV Total energy + Delta-G solvation = -2582.578966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.15342 -38.15433 -36.42659 -34.65058 -33.82429 -32.18429 -30.29811 -27.94092 -26.34953 -24.80407 -23.76444 -22.92696 -22.18095 -18.83295 -18.36153 -17.73104 -16.96388 -16.58474 -15.91404 -15.73794 -15.64868 -15.17987 -14.80698 -14.49632 -14.38502 -13.85653 -13.68276 -13.61690 -13.13796 -12.94623 -12.70515 -12.53930 -12.43822 -12.35109 -11.99649 -11.33639 -10.89483 -10.67901 -10.64826 -10.35231 -9.23455 -8.53890 -8.24428 -6.35894 0.39291 0.54074 1.42105 1.43890 1.55087 2.10129 2.40533 2.98663 3.09563 3.62515 3.74610 3.92244 4.02114 4.13283 4.20628 4.27877 4.36706 4.45529 4.75864 4.86056 4.87845 4.95748 4.99893 5.06845 5.18189 5.21723 5.24224 5.50504 5.58610 5.75026 5.97270 6.06931 6.34522 6.59796 6.66384 6.85284 7.25165 7.35306 8.87413 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.075547 B = 0.003272 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.541743 B = 8554.723519 C = 8892.184896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.206 4.206 3 C -0.037 4.037 4 C -0.247 4.247 5 C 0.378 3.622 6 N -0.727 5.727 7 C 0.148 3.852 8 C 0.054 3.946 9 N -0.683 5.683 10 C 0.208 3.792 11 C -0.537 4.537 12 H 0.068 0.932 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.261 1.261 19 N -0.573 5.573 20 C 0.132 3.868 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.157 0.843 25 H 0.139 0.861 26 H 0.402 0.598 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.340 0.660 32 H 0.001 0.999 33 H -0.036 1.036 34 H 0.266 0.734 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.556 -1.903 -0.961 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.211 4.211 3 C -0.063 4.063 4 C -0.272 4.272 5 C 0.143 3.857 6 N -0.359 5.359 7 C 0.024 3.976 8 C -0.076 4.076 9 N -0.315 5.315 10 C 0.080 3.920 11 C -0.575 4.575 12 H 0.087 0.913 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.185 1.185 19 N -0.291 5.291 20 C -0.025 4.025 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.174 0.826 25 H 0.157 0.843 26 H 0.237 0.763 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.158 0.842 32 H 0.019 0.981 33 H -0.019 1.019 34 H 0.074 0.926 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.860 -2.493 -0.277 22.997 hybrid contribution 1.024 0.415 -0.854 1.397 sum -21.836 -2.079 -1.131 21.964 Atomic orbital electron populations 1.20598 0.88206 1.03615 1.02801 1.20947 0.98964 0.93470 1.07742 1.21590 0.92715 0.99368 0.92608 1.21651 0.96365 0.97217 1.12001 1.18586 0.85337 0.90061 0.91694 1.44432 1.01689 1.09171 1.80647 1.21119 0.88644 0.85655 1.02213 1.21951 0.92577 0.92790 1.00286 1.60431 1.05622 1.15778 1.49622 1.19224 0.83625 0.95716 0.93433 1.21552 0.91695 0.93533 1.50712 0.91343 1.25989 0.98954 1.00391 0.94523 1.70091 1.08770 1.27233 1.51461 0.85294 0.77517 0.78793 0.78464 1.19877 1.20801 1.18475 1.67126 1.10050 1.30141 1.21793 1.22743 0.87828 0.99011 0.92938 0.90805 0.90633 0.90810 0.82557 0.84321 0.76262 0.91185 0.90976 0.91810 0.95649 0.84236 0.98100 1.01861 0.92574 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.03 71.24 0.71 -0.28 16 2 C -0.21 -3.68 5.90 -19.76 -0.12 -3.79 16 3 C -0.04 -0.70 9.85 22.44 0.22 -0.48 16 4 C -0.25 -5.77 9.33 22.50 0.21 -5.56 16 5 C 0.38 10.33 7.65 133.07 1.02 11.35 16 6 N -0.73 -19.64 5.73 -345.07 -1.98 -21.61 16 7 C 0.15 4.02 5.15 86.38 0.44 4.46 16 8 C 0.05 1.83 5.80 86.30 0.50 2.34 16 9 N -0.68 -28.39 6.49 -517.93 -3.36 -31.75 16 10 C 0.21 11.05 5.44 85.56 0.47 11.51 16 11 C -0.54 -30.32 9.32 25.60 0.24 -30.08 16 12 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.94 -56.51 13.29 21.45 0.28 -56.23 16 15 Si 0.98 43.87 29.54 68.60 2.03 45.89 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 19 N -0.57 -15.71 10.39 -193.26 -2.01 -17.72 16 20 C 0.13 2.79 10.85 84.62 0.92 3.71 16 21 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 22 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 23 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 24 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 25 H 0.14 2.95 6.71 -2.91 -0.02 2.93 16 26 H 0.40 10.79 8.60 -92.71 -0.80 9.99 16 27 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 28 H 0.07 1.96 7.93 -2.38 -0.02 1.94 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.34 13.06 8.72 -89.70 -0.78 12.28 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H -0.04 -2.07 8.14 -2.39 -0.02 -2.09 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -66.42 300.54 -0.45 -66.87 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.49 Total: 20.92 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.08 Total: -6.37 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -7.06 Total: -127.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -66.42 -0.45 -66.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905602763.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.805 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds