Wall clock time and date at job start Mon Mar 30 2020 17:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38063 * 119.57494 * 2 1 4 4 C 1.38845 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.25134 * 4 3 2 6 6 C 1.39102 * 119.09651 * 359.48210 * 5 4 3 7 7 N 1.39003 * 119.70417 * 180.27327 * 6 5 4 8 8 C 1.46500 * 120.00314 * 0.25316 * 7 6 5 9 9 C 1.52998 * 109.47379 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.47290 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00217 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47262 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00205 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00354 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00333 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46919 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47180 * 120.00063 * 16 14 12 19 19 H 1.48501 * 109.47279 * 240.00153 * 16 14 12 20 20 N 1.31948 * 119.57261 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47390 * 90.00120 * 1 2 3 22 22 H 1.09000 * 109.46998 * 210.00381 * 1 2 3 23 23 H 1.09005 * 109.47089 * 330.00212 * 1 2 3 24 24 H 1.08000 * 120.33564 * 359.97225 * 3 2 1 25 25 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 26 26 H 1.07995 * 120.45228 * 179.72755 * 5 4 3 27 27 H 0.97006 * 120.00266 * 180.25403 * 7 6 5 28 28 H 1.09004 * 109.46931 * 300.00213 * 8 7 6 29 29 H 1.09001 * 109.46680 * 59.99915 * 8 7 6 30 30 H 1.08996 * 109.47459 * 300.00319 * 9 8 7 31 31 H 1.09001 * 109.46806 * 59.99995 * 9 8 7 32 32 H 1.00901 * 110.99812 * 303.95610 * 10 9 8 33 33 H 1.09007 * 109.47076 * 300.00135 * 11 10 9 34 34 H 1.08999 * 109.46855 * 59.99799 * 11 10 9 35 35 H 0.96995 * 120.00217 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0064 6 6 3.4815 -1.1950 -0.0005 7 7 4.1267 -2.4263 -0.0005 8 6 5.5904 -2.4863 -0.0011 9 6 6.0409 -3.9485 -0.0004 10 7 7.5087 -4.0087 -0.0016 11 6 7.9786 -5.4005 -0.0015 12 6 9.4854 -5.4220 -0.0021 13 1 10.0387 -4.4945 -0.0021 14 6 10.1577 -6.6257 -0.0016 15 7 9.4839 -7.7553 -0.0012 16 14 12.0254 -6.6524 -0.0031 17 1 12.5403 -5.2596 -0.0041 18 1 12.5114 -7.3585 1.2096 19 1 12.5095 -7.3605 -1.2154 20 7 2.1582 -1.1476 0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6469 2.1352 -0.0005 25 1 4.1329 2.1206 -0.0010 26 1 5.3110 -0.0650 -0.0114 27 1 3.6077 -3.2458 -0.0002 28 1 5.9741 -1.9879 -0.8914 29 1 5.9748 -1.9876 0.8886 30 1 5.6572 -4.4465 0.8900 31 1 5.6565 -4.4475 -0.8899 32 1 7.8909 -3.4984 -0.7837 33 1 7.6086 -5.9088 0.8890 34 1 7.6071 -5.9093 -0.8910 35 1 9.9568 -8.6021 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905604419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:51 Heat of formation + Delta-G solvation = 29.338352 kcal Electronic energy + Delta-G solvation = -15315.084010 eV Core-core repulsion = 12733.476578 eV Total energy + Delta-G solvation = -2581.607433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.25232 -36.87106 -34.90432 -32.77029 -32.60760 -31.32616 -28.48612 -27.15832 -25.62816 -22.85803 -22.58424 -21.39257 -21.02778 -17.56713 -16.57376 -16.36873 -15.66095 -15.48792 -14.84235 -14.61557 -14.36106 -13.99660 -13.58818 -13.02778 -12.90840 -12.81460 -12.39880 -12.33492 -11.85899 -11.75055 -11.27278 -11.08102 -10.75500 -10.66419 -10.17458 -9.99444 -9.53427 -9.45264 -9.24004 -8.53850 -7.66763 -7.45363 -6.08303 -4.10782 1.25168 1.46063 3.12417 3.28407 3.35778 3.40781 3.87549 4.39285 4.46220 4.72407 5.01196 5.08028 5.20764 5.23984 5.27972 5.29574 5.43484 5.47833 5.53255 5.60990 5.72371 5.89712 6.05429 6.18163 6.19377 6.28653 6.58299 7.05017 7.14506 7.32437 7.60573 7.71265 8.04489 8.20778 8.26068 8.49811 8.98187 9.54503 11.02920 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.071615 B = 0.003337 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.884049 B = 8389.597952 C = 8747.403015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.173 3.827 3 C -0.244 4.244 4 C -0.031 4.031 5 C -0.246 4.246 6 C 0.412 3.588 7 N -0.721 5.721 8 C 0.129 3.871 9 C 0.049 3.951 10 N -0.686 5.686 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 N -0.550 5.550 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.404 0.596 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.331 0.669 33 H 0.029 0.971 34 H -0.012 1.012 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 16.170 -0.842 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.034 3.966 3 C -0.267 4.267 4 C -0.057 4.057 5 C -0.271 4.271 6 C 0.175 3.825 7 N -0.352 5.352 8 C 0.004 3.996 9 C -0.081 4.081 10 N -0.317 5.317 11 C 0.068 3.932 12 C -0.554 4.554 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.211 1.211 20 N -0.269 5.269 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.239 0.761 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.147 0.853 33 H 0.047 0.953 34 H 0.006 0.994 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.617 15.248 -0.148 21.123 hybrid contribution 1.148 -0.034 -0.912 1.466 sum -13.469 15.214 -1.059 20.347 Atomic orbital electron populations 1.20711 0.89212 1.03234 1.02905 1.20873 0.96237 0.87576 0.91868 1.21549 0.94814 0.98696 1.11594 1.21285 0.94218 0.97500 0.92720 1.21438 1.01067 0.91939 1.12672 1.18326 0.88041 0.86451 0.89638 1.44563 1.06277 1.04778 1.79628 1.21427 0.77749 0.98641 1.01734 1.21986 0.91963 0.93486 1.00688 1.60623 1.03535 1.18571 1.48961 1.19581 0.95594 0.82053 0.95984 1.21202 0.91034 0.92676 1.50528 0.91789 1.25004 0.98913 0.95471 0.95239 1.69971 1.35554 0.97381 1.50775 0.86400 0.85071 0.78150 0.77546 1.19600 1.20945 1.21053 1.66952 1.07757 1.30237 1.21947 0.90528 0.90640 0.90782 0.85539 0.85199 0.84953 0.76081 0.92191 0.91000 0.91041 0.95621 0.85309 0.95261 0.99398 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.00 0.37 -0.49 16 2 C 0.17 2.04 6.78 -82.61 -0.56 1.48 16 3 C -0.24 -2.53 9.73 -39.42 -0.38 -2.91 16 4 C -0.03 -0.33 10.17 -39.32 -0.40 -0.73 16 5 C -0.25 -3.06 9.33 -39.22 -0.37 -3.43 16 6 C 0.41 5.79 7.65 -155.01 -1.19 4.60 16 7 N -0.72 -9.79 5.73 -60.42 -0.35 -10.14 16 8 C 0.13 1.78 5.15 -4.04 -0.02 1.76 16 9 C 0.05 0.83 5.80 -3.82 -0.02 0.81 16 10 N -0.69 -14.17 6.49 -115.06 -0.75 -14.92 16 11 C 0.19 5.03 5.44 -4.98 -0.03 5.00 16 12 C -0.52 -14.47 9.32 -34.44 -0.32 -14.80 16 13 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 N -0.55 -7.78 10.30 -8.67 -0.09 -7.87 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 24 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.13 1.51 6.71 -52.49 -0.35 1.16 16 27 H 0.40 5.32 8.60 -40.82 -0.35 4.97 16 28 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 29 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.33 6.42 8.72 -39.29 -0.34 6.07 16 33 H 0.03 0.82 8.14 -51.92 -0.42 0.39 16 34 H -0.01 -0.32 8.14 -51.93 -0.42 -0.75 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -31.00 300.70 -9.17 -40.16 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.22 Total: 4.94 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.02 Total: -7.24 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.45 Total: -58.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.00 -9.17 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905604419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.502 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds