Wall clock time and date at job start Mon Mar 30 2020 17:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38063 * 119.57494 * 2 1 4 4 C 1.38845 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.25134 * 4 3 2 6 6 C 1.39102 * 119.09651 * 359.48210 * 5 4 3 7 7 N 1.39003 * 119.70417 * 180.27327 * 6 5 4 8 8 C 1.46500 * 120.00314 * 0.25316 * 7 6 5 9 9 C 1.52998 * 109.47379 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.47290 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00217 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47262 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00205 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00354 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99890 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00333 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46919 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47180 * 120.00063 * 16 14 12 19 19 H 1.48501 * 109.47279 * 240.00153 * 16 14 12 20 20 N 1.31948 * 119.57261 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47390 * 90.00120 * 1 2 3 22 22 H 1.09000 * 109.46998 * 210.00381 * 1 2 3 23 23 H 1.09005 * 109.47089 * 330.00212 * 1 2 3 24 24 H 1.08000 * 120.33564 * 359.97225 * 3 2 1 25 25 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 26 26 H 1.07995 * 120.45228 * 179.72755 * 5 4 3 27 27 H 0.97006 * 120.00266 * 180.25403 * 7 6 5 28 28 H 1.09004 * 109.46931 * 300.00213 * 8 7 6 29 29 H 1.09001 * 109.46680 * 59.99915 * 8 7 6 30 30 H 1.08996 * 109.47459 * 300.00319 * 9 8 7 31 31 H 1.09001 * 109.46806 * 59.99995 * 9 8 7 32 32 H 1.00901 * 110.99812 * 303.95610 * 10 9 8 33 33 H 1.09007 * 109.47076 * 300.00135 * 11 10 9 34 34 H 1.08999 * 109.46855 * 59.99799 * 11 10 9 35 35 H 0.96995 * 120.00217 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0064 6 6 3.4815 -1.1950 -0.0005 7 7 4.1267 -2.4263 -0.0005 8 6 5.5904 -2.4863 -0.0011 9 6 6.0409 -3.9485 -0.0004 10 7 7.5087 -4.0087 -0.0016 11 6 7.9786 -5.4005 -0.0015 12 6 9.4854 -5.4220 -0.0021 13 1 10.0387 -4.4945 -0.0021 14 6 10.1577 -6.6257 -0.0016 15 7 9.4839 -7.7553 -0.0012 16 14 12.0254 -6.6524 -0.0031 17 1 12.5403 -5.2596 -0.0041 18 1 12.5114 -7.3585 1.2096 19 1 12.5095 -7.3605 -1.2154 20 7 2.1582 -1.1476 0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6469 2.1352 -0.0005 25 1 4.1329 2.1206 -0.0010 26 1 5.3110 -0.0650 -0.0114 27 1 3.6077 -3.2458 -0.0002 28 1 5.9741 -1.9879 -0.8914 29 1 5.9748 -1.9876 0.8886 30 1 5.6572 -4.4465 0.8900 31 1 5.6565 -4.4475 -0.8899 32 1 7.8909 -3.4984 -0.7837 33 1 7.6086 -5.9088 0.8890 34 1 7.6071 -5.9093 -0.8910 35 1 9.9568 -8.6021 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905604419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:50 Heat of formation + Delta-G solvation = 7.848097 kcal Electronic energy + Delta-G solvation = -15316.015898 eV Core-core repulsion = 12733.476578 eV Total energy + Delta-G solvation = -2582.539320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15292 -38.16130 -36.40688 -34.56762 -33.58064 -32.45920 -29.99963 -28.05302 -27.31318 -24.13772 -23.73467 -23.11468 -22.05474 -18.81360 -18.25577 -17.48427 -16.97367 -16.67097 -16.42303 -15.72503 -15.68389 -15.15494 -14.65946 -14.54091 -14.39560 -13.78186 -13.63339 -13.52052 -13.02472 -12.93496 -12.75582 -12.56030 -12.51937 -12.36416 -12.00419 -11.31478 -11.10680 -10.68919 -10.45899 -10.36136 -9.23687 -8.62614 -8.24656 -6.36050 0.37831 0.58401 1.41788 1.42558 1.56487 2.07596 2.40358 2.98065 3.09359 3.59832 3.65034 3.92125 3.99513 4.11703 4.22703 4.39832 4.46488 4.51300 4.74910 4.82520 4.83946 4.87563 4.88696 5.06745 5.20923 5.21780 5.25696 5.44038 5.58657 5.72492 5.97207 6.08912 6.34271 6.59602 6.66280 6.85252 7.27709 7.35213 8.87398 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.071615 B = 0.003337 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.884049 B = 8389.597952 C = 8747.403015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.153 3.847 3 C -0.239 4.239 4 C -0.032 4.032 5 C -0.261 4.261 6 C 0.388 3.612 7 N -0.726 5.726 8 C 0.149 3.851 9 C 0.054 3.946 10 N -0.683 5.683 11 C 0.208 3.792 12 C -0.536 4.536 13 H 0.068 0.932 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.975 3.025 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.278 1.278 20 N -0.577 5.577 21 H 0.086 0.914 22 H 0.066 0.934 23 H 0.099 0.901 24 H 0.158 0.842 25 H 0.161 0.839 26 H 0.138 0.862 27 H 0.402 0.598 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.340 0.660 33 H 0.001 0.999 34 H -0.036 1.036 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.270 18.436 -0.990 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.015 3.985 3 C -0.261 4.261 4 C -0.058 4.058 5 C -0.286 4.286 6 C 0.152 3.848 7 N -0.359 5.359 8 C 0.024 3.976 9 C -0.076 4.076 10 N -0.314 5.314 11 C 0.080 3.920 12 C -0.574 4.574 13 H 0.086 0.914 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.203 1.203 20 N -0.297 5.297 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.118 0.882 24 H 0.176 0.824 25 H 0.178 0.822 26 H 0.156 0.844 27 H 0.237 0.763 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.158 0.842 33 H 0.019 0.981 34 H -0.019 1.019 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.434 17.556 -0.300 22.729 hybrid contribution 0.955 -0.665 -0.864 1.449 sum -13.479 16.891 -1.164 21.641 Atomic orbital electron populations 1.20791 0.87072 1.04102 1.03780 1.21529 0.97862 0.87561 0.91578 1.21957 0.94991 0.99459 1.09711 1.21711 0.94699 0.97988 0.91352 1.21638 1.01476 0.92246 1.13219 1.18562 0.88494 0.86771 0.90938 1.44453 1.05861 1.05010 1.80532 1.21120 0.78225 0.96031 1.02231 1.21949 0.89523 0.95829 1.00284 1.60439 1.05996 1.15488 1.49512 1.19228 0.94987 0.84361 0.93439 1.21578 0.92150 0.93070 1.50597 0.91361 1.25988 1.04373 0.94978 0.94536 1.70098 1.37801 0.98125 1.51526 0.85243 0.78440 0.78663 0.77698 1.18405 1.20482 1.20336 1.66950 1.08047 1.31854 1.22875 0.89537 0.91457 0.88231 0.82402 0.82153 0.84396 0.76287 0.91157 0.90981 0.91807 0.95661 0.84235 0.98096 1.01864 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.17 71.23 0.72 -0.74 16 2 C 0.15 3.36 6.78 42.50 0.29 3.65 16 3 C -0.24 -4.30 9.73 22.37 0.22 -4.08 16 4 C -0.03 -0.60 10.17 22.44 0.23 -0.37 16 5 C -0.26 -6.16 9.33 22.50 0.21 -5.95 16 6 C 0.39 10.75 7.65 133.05 1.02 11.77 16 7 N -0.73 -19.81 5.73 -345.08 -1.98 -21.79 16 8 C 0.15 4.05 5.15 86.38 0.44 4.50 16 9 C 0.05 1.85 5.80 86.30 0.50 2.35 16 10 N -0.68 -28.44 6.49 -517.94 -3.36 -31.80 16 11 C 0.21 11.05 5.44 85.56 0.47 11.51 16 12 C -0.54 -30.29 9.32 25.60 0.24 -30.05 16 13 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 16 Si 0.98 43.91 29.54 68.60 2.03 45.94 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 N -0.58 -16.14 10.30 -181.34 -1.87 -18.01 16 21 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.10 0.92 8.08 -2.38 -0.02 0.90 16 24 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 25 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 26 H 0.14 2.97 6.71 -2.91 -0.02 2.95 16 27 H 0.40 10.89 8.60 -92.70 -0.80 10.09 16 28 H 0.07 1.78 7.92 -2.39 -0.02 1.76 16 29 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.34 13.09 8.72 -89.69 -0.78 12.31 16 33 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 34 H -0.04 -2.07 8.14 -2.39 -0.02 -2.09 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.02 300.70 -0.59 -67.61 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.49 Total: 21.23 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.80 Total: -6.99 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -6.92 Total: -127.79 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -67.02 -0.59 -67.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905604419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.455 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds