Wall clock time and date at job start Mon Mar 30 2020 17:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.47266 * 2 1 4 4 C 1.46899 * 111.00195 * 163.88734 * 3 2 1 5 5 C 1.50697 * 109.47151 * 284.12103 * 4 3 2 6 6 H 1.07996 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99984 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00096 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99996 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46846 * 60.00166 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46981 * 300.00199 * 9 7 5 13 13 C 1.46904 * 110.99855 * 287.83921 * 3 2 1 14 14 H 1.09004 * 109.47034 * 51.44292 * 13 3 2 15 15 C 1.52996 * 109.46931 * 171.43370 * 13 3 2 16 16 C 1.50698 * 109.47521 * 291.43644 * 13 3 2 17 17 N 1.31793 * 119.12107 * 301.61027 * 16 13 3 18 18 C 1.32338 * 120.81694 * 179.76108 * 17 16 13 19 19 C 1.38598 * 119.10260 * 0.49532 * 18 17 16 20 20 C 1.38590 * 118.39852 * 359.75949 * 19 18 17 21 21 N 1.31796 * 119.12459 * 121.87306 * 16 13 3 22 22 H 1.09000 * 109.46556 * 59.35637 * 1 2 3 23 23 H 1.09000 * 109.47390 * 179.35822 * 1 2 3 24 24 H 1.09003 * 109.46873 * 299.36338 * 1 2 3 25 25 H 1.09003 * 109.46548 * 119.99937 * 2 1 3 26 26 H 1.08997 * 109.47069 * 239.99829 * 2 1 3 27 27 H 1.09012 * 109.46765 * 44.11634 * 4 3 2 28 28 H 1.08995 * 109.47391 * 164.11423 * 4 3 2 29 29 H 0.96997 * 120.00002 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.48113 * 300.00320 * 15 13 3 31 31 H 1.09004 * 109.47034 * 60.00623 * 15 13 3 32 32 H 1.09001 * 109.47604 * 179.97438 * 15 13 3 33 33 H 1.08002 * 120.44424 * 180.27679 * 18 17 16 34 34 H 1.07994 * 120.79660 * 179.77408 * 19 18 17 35 35 H 1.08004 * 120.44981 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4374 1.4421 0.3806 5 6 3.5663 1.2442 1.8690 6 1 2.6834 1.0917 2.4719 7 6 4.8115 1.2579 2.4609 8 7 5.8867 1.4431 1.7266 9 14 4.9712 1.0134 4.3060 10 1 4.4106 -0.3098 4.6802 11 1 6.4045 1.0698 4.6905 12 1 4.2257 2.0851 5.0137 13 6 1.7991 2.0213 -1.3055 14 1 0.7576 1.8934 -1.6007 15 6 2.1212 3.5137 -1.2063 16 6 2.6952 1.3813 -2.3343 17 7 3.9997 1.3972 -2.1474 18 6 4.8174 0.8410 -3.0269 19 6 4.2852 0.2463 -4.1600 20 6 2.9090 0.2541 -4.3240 21 7 2.1538 0.8251 -3.3995 22 1 -0.3632 0.5238 -0.8842 23 1 -0.3634 -1.0276 -0.0115 24 1 -0.3633 0.5039 0.8957 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.9851 0.6559 -0.1392 28 1 3.8484 2.4136 0.1062 29 1 6.7627 1.4524 2.1430 30 1 1.4732 3.9768 -0.4623 31 1 3.1627 3.6418 -0.9111 32 1 1.9580 3.9859 -2.1751 33 1 5.8852 0.8537 -2.8655 34 1 4.9274 -0.2124 -4.8972 35 1 2.4590 -0.1995 -5.1947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:10 Heat of formation + Delta-G solvation = 39.622330 kcal Electronic energy + Delta-G solvation = -17124.792051 eV Core-core repulsion = 14543.630565 eV Total energy + Delta-G solvation = -2581.161486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.11281 -38.88611 -34.85711 -34.59622 -33.74571 -31.81772 -30.75962 -27.99761 -25.86690 -25.27237 -24.04673 -23.42959 -20.97317 -18.79735 -18.15800 -17.68939 -16.73165 -16.47580 -16.14090 -16.04300 -15.28661 -15.08741 -14.72546 -14.36235 -14.04226 -13.74744 -13.14300 -13.00823 -12.83586 -12.58002 -12.51445 -12.47829 -12.19381 -11.90996 -11.74038 -11.70378 -11.26700 -11.18004 -10.51810 -10.37479 -10.05467 -9.03896 -8.08314 -6.17991 -0.02246 0.25589 1.40761 1.43912 1.51379 2.43972 2.84619 2.99729 3.19211 3.23936 3.49449 3.78739 4.10954 4.20318 4.25574 4.27581 4.39152 4.49768 4.57124 4.66343 4.80927 4.87918 4.96146 5.08412 5.17185 5.30512 5.36437 5.49139 5.53248 5.60098 5.77261 6.15799 6.21124 6.44077 6.68913 6.99413 7.25359 7.48800 8.99847 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.008604 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.974752 B = 3253.447809 C = 3782.406522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.061 3.939 3 N -0.523 5.523 4 C 0.224 3.776 5 C -0.529 4.529 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.925 5.925 9 Si 0.960 3.040 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.142 3.858 14 H 0.111 0.889 15 C -0.127 4.127 16 C 0.273 3.727 17 N -0.522 5.522 18 C 0.117 3.883 19 C -0.217 4.217 20 C 0.131 3.869 21 N -0.532 5.532 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.000 1.000 27 H -0.023 1.023 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.172 0.828 34 H 0.186 0.814 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -2.391 -12.066 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 N -0.246 5.246 4 C 0.098 3.902 5 C -0.567 4.567 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.565 5.565 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.031 3.969 14 H 0.128 0.872 15 C -0.186 4.186 16 C 0.004 3.996 17 N -0.236 5.236 18 C -0.048 4.048 19 C -0.238 4.238 20 C -0.035 4.035 21 N -0.246 5.246 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.019 0.981 27 H -0.005 1.005 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.699 -1.684 -11.004 12.993 hybrid contribution 1.788 -1.033 -0.218 2.076 sum -4.912 -2.717 -11.222 12.548 Atomic orbital electron populations 1.21683 0.92738 1.01973 1.02350 1.21926 0.97260 0.89261 0.98304 1.62545 1.21629 1.16845 1.23562 1.19393 0.82050 0.95631 0.93119 1.21610 0.92368 1.48417 0.94331 0.92783 1.25799 0.95490 0.95420 1.02669 1.70126 0.98226 1.51162 1.37009 0.85586 0.76879 0.78834 0.80155 1.19765 1.20869 1.19447 1.20854 0.96850 0.94835 0.84347 0.87173 1.21720 1.01991 0.92894 1.01949 1.24479 0.89439 0.92931 0.92742 1.68670 1.05789 1.18810 1.30339 1.23750 1.01260 0.90500 0.89258 1.23242 0.98233 1.02055 1.00289 1.23941 0.91130 0.91501 0.96907 1.68328 1.42083 1.10894 1.03316 0.92100 0.91227 0.92038 0.92804 0.98136 1.00539 0.96206 0.93149 0.90475 0.93914 0.91333 0.81093 0.79621 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.98 71.98 0.72 -3.40 16 2 C 0.06 2.54 5.40 86.31 0.47 3.00 16 3 N -0.52 -23.79 4.34 -879.91 -3.82 -27.61 16 4 C 0.22 12.32 3.05 85.56 0.26 12.58 16 5 C -0.53 -31.23 8.53 25.60 0.22 -31.02 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.92 -56.91 13.29 21.45 0.28 -56.63 16 9 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.14 5.55 2.71 44.17 0.12 5.66 16 14 H 0.11 3.85 6.39 -2.38 -0.02 3.83 16 15 C -0.13 -4.71 9.04 71.98 0.65 -4.06 16 16 C 0.27 10.67 5.17 138.75 0.72 11.39 16 17 N -0.52 -22.02 6.81 -187.84 -1.28 -23.30 16 18 C 0.12 3.89 11.31 84.70 0.96 4.85 16 19 C -0.22 -5.16 10.17 22.44 0.23 -4.93 16 20 C 0.13 3.24 11.30 84.70 0.96 4.20 16 21 N -0.53 -17.61 10.31 -187.85 -1.94 -19.55 16 22 H 0.06 1.79 6.61 -2.39 -0.02 1.77 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.05 2.49 7.35 -2.39 -0.02 2.48 16 26 H 0.00 0.02 7.08 -2.39 -0.02 0.00 16 27 H -0.02 -1.39 6.45 -2.38 -0.02 -1.41 16 28 H 0.02 1.19 5.51 -2.39 -0.01 1.18 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.04 1.85 6.09 -2.38 -0.01 1.84 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 34 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -72.06 286.06 2.11 -69.95 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.07 Total: 10.33 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.76 Total: -1.01 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -6.75 Total: -127.09 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.06 2.11 -69.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.572 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds