Wall clock time and date at job start Mon Mar 30 2020 17:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40078 * 126.03560 * 2 1 4 4 C 1.30838 * 108.20282 * 180.02562 * 3 2 1 5 5 C 1.39869 * 108.20392 * 359.77612 * 4 3 2 6 6 C 1.34943 * 126.03380 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.13065 * 359.93796 * 6 2 1 8 8 H 1.08997 * 110.42581 * 297.31780 * 7 6 2 9 9 C 1.54904 * 110.36944 * 59.63179 * 7 6 2 10 10 C 1.55146 * 101.65245 * 155.90072 * 9 7 6 11 11 C 1.54319 * 103.01774 * 324.34323 * 10 9 7 12 12 N 1.47443 * 107.23348 * 22.28266 * 11 10 9 13 13 C 1.46900 * 110.99971 * 123.25638 * 12 11 10 14 14 C 1.50699 * 109.46724 * 69.87449 * 13 12 11 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 H 1.08999 * 109.47028 * 269.97664 * 1 2 3 23 23 H 1.08995 * 109.47385 * 29.97856 * 1 2 3 24 24 H 1.08999 * 109.47471 * 149.97814 * 1 2 3 25 25 H 1.08009 * 125.89840 * 179.97438 * 4 3 2 26 26 H 1.07995 * 126.04094 * 180.23211 * 5 4 3 27 27 H 1.09004 * 110.99516 * 37.80569 * 9 7 6 28 28 H 1.08999 * 111.02422 * 273.99856 * 9 7 6 29 29 H 1.09004 * 110.70040 * 205.96277 * 10 9 7 30 30 H 1.08993 * 110.85699 * 82.79740 * 10 9 7 31 31 H 1.09005 * 109.88464 * 262.87908 * 11 10 9 32 32 H 1.08993 * 109.88785 * 141.69460 * 11 10 9 33 33 H 1.09004 * 109.47135 * 309.87814 * 13 12 11 34 34 H 1.08997 * 109.47656 * 189.87428 * 13 12 11 35 35 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5436 -0.6666 0.0043 6 6 2.2588 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0002 8 1 1.2353 -2.7442 0.9082 9 6 0.9321 -2.8145 -1.2519 10 6 1.1009 -4.3494 -1.4024 11 6 2.5622 -4.5829 -0.9648 12 7 2.9539 -3.4387 -0.1214 13 6 3.4092 -3.8903 1.2002 14 6 4.7330 -4.5970 1.0609 15 1 5.1905 -4.6999 0.0880 16 6 5.3601 -5.1121 2.1755 17 7 6.5156 -5.7284 2.0540 18 14 4.5685 -4.9348 3.8582 19 1 3.6905 -6.1040 4.1179 20 1 3.7594 -3.6901 3.8959 21 1 5.6262 -4.8693 4.8984 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 4.4054 1.3710 -0.0011 26 1 4.4210 -1.2963 0.0086 27 1 1.3221 -2.2913 -2.1251 28 1 -0.1109 -2.5519 -1.0756 29 1 0.9557 -4.6532 -2.4391 30 1 0.4124 -4.8816 -0.7462 31 1 3.2078 -4.6356 -1.8415 32 1 2.6345 -5.5076 -0.3923 33 1 2.6744 -4.5754 1.6231 34 1 3.5245 -3.0294 1.8586 35 1 6.9566 -6.0911 2.8381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932272781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:58 Heat of formation + Delta-G solvation = 89.653949 kcal Electronic energy + Delta-G solvation = -16956.099003 eV Core-core repulsion = 14377.107051 eV Total energy + Delta-G solvation = -2578.991952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91149 -38.29296 -33.37381 -32.79328 -31.19784 -30.76723 -27.32204 -26.89129 -26.46166 -22.45304 -21.36185 -20.87702 -20.01768 -18.85681 -16.88858 -16.50009 -15.53869 -15.14471 -14.69471 -14.18816 -13.85754 -13.28887 -13.01945 -12.94397 -12.71464 -12.64130 -12.35429 -12.18257 -11.81498 -11.34208 -11.06231 -10.80059 -10.66557 -10.55888 -10.30611 -10.08812 -9.81282 -9.31551 -8.88821 -8.59079 -8.01120 -7.51071 -6.05877 -4.03193 2.23698 2.79411 3.26534 3.33311 3.35345 3.37683 4.41023 4.51956 4.72732 4.81311 4.91735 5.15938 5.22903 5.27022 5.38317 5.38735 5.45126 5.58281 5.76437 5.90659 5.98298 6.10107 6.18677 6.35100 6.48830 6.60284 6.71585 6.80232 6.89445 7.17379 7.38555 7.57689 7.83417 7.91412 8.10463 8.62898 9.04218 9.55939 11.07256 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.008418 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.956625 B = 3325.331365 C = 3867.205592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.381 5.381 3 N -0.313 5.313 4 C 0.038 3.962 5 C -0.236 4.236 6 C 0.099 3.901 7 C 0.131 3.869 8 H 0.061 0.939 9 C -0.122 4.122 10 C -0.143 4.143 11 C 0.056 3.944 12 N -0.504 5.504 13 C 0.159 3.841 14 C -0.506 4.506 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.871 3.129 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.285 1.285 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.179 0.821 26 H 0.160 0.840 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.066 0.934 33 H -0.015 1.015 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 7.133 -4.925 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.165 5.165 3 N -0.135 5.135 4 C -0.147 4.147 5 C -0.264 4.264 6 C -0.028 4.028 7 C 0.019 3.981 8 H 0.078 0.922 9 C -0.161 4.161 10 C -0.181 4.181 11 C -0.072 4.072 12 N -0.228 5.228 13 C 0.032 3.968 14 C -0.545 4.545 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.699 3.301 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.211 1.211 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.196 0.804 26 H 0.178 0.822 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.002 0.998 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.283 8.302 -5.031 16.452 hybrid contribution -0.402 -1.062 1.498 1.880 sum -13.685 7.240 -3.533 15.880 Atomic orbital electron populations 1.21858 0.75513 1.04089 1.02872 1.48291 1.05903 1.03484 1.58870 1.77232 1.02031 1.07844 1.26350 1.23861 0.94901 0.95643 1.00287 1.21462 0.97506 0.93929 1.13536 1.20877 0.91389 0.89395 1.01119 1.20893 0.91973 0.87833 0.97356 0.92165 1.22787 0.98403 0.96942 0.97926 1.22849 0.98550 0.95104 1.01619 1.22674 0.92700 0.93982 0.97824 1.63186 1.28792 1.14487 1.16313 1.20405 0.96086 0.94828 0.85464 1.20978 1.02728 1.34484 0.96276 0.90018 1.24874 0.94757 0.94899 0.98618 1.69887 1.15823 1.38083 1.29992 0.86922 0.79420 0.78913 0.84877 1.20409 1.19211 1.21079 0.91407 0.89794 0.89608 0.80399 0.82215 0.90522 0.91408 0.91030 0.91751 0.91016 0.91557 0.99763 0.95246 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 11.24 59.85 0.67 1.75 16 2 N -0.38 -6.05 4.01 -63.89 -0.26 -6.31 16 3 N -0.31 -5.38 12.58 30.63 0.39 -4.99 16 4 C 0.04 0.64 12.03 -17.36 -0.21 0.43 16 5 C -0.24 -4.39 10.14 -40.01 -0.41 -4.80 16 6 C 0.10 1.74 6.22 -82.26 -0.51 1.23 16 7 C 0.13 2.20 2.60 -67.34 -0.18 2.02 16 8 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 9 C -0.12 -1.62 5.64 -24.59 -0.14 -1.76 16 10 C -0.14 -1.92 6.94 -24.91 -0.17 -2.09 16 11 C 0.06 1.00 6.39 -2.84 -0.02 0.98 16 12 N -0.50 -10.13 4.08 -226.18 -0.92 -11.05 16 13 C 0.16 3.75 3.37 -4.98 -0.02 3.74 16 14 C -0.51 -14.07 9.22 -34.44 -0.32 -14.38 16 15 H 0.08 2.48 8.03 -52.49 -0.42 2.06 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 18 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 0.78 5.21 -51.93 -0.27 0.51 16 25 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 26 H 0.16 3.26 7.83 -52.49 -0.41 2.85 16 27 H 0.08 1.05 8.05 -51.93 -0.42 0.64 16 28 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 33 H -0.02 -0.36 7.39 -51.93 -0.38 -0.74 16 34 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 284.29 15.07 4.28 4.28 Total: -1.00 -31.86 284.29 -6.89 -38.75 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.09 Total: 0.05 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.39 Total: -10.98 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.02 Total: -48.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.86 -6.89 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932272781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.403 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds