Wall clock time and date at job start Mon Mar 30 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.04148 * 2 1 4 4 C 1.38262 * 120.07852 * 180.27740 * 3 2 1 5 5 C 1.38309 * 120.14802 * 359.71890 * 4 3 2 6 6 C 1.38074 * 120.07556 * 0.02562 * 5 4 3 7 7 N 1.48005 * 120.03882 * 180.02562 * 6 5 4 8 8 O 1.21800 * 119.99941 * 5.23895 * 7 6 5 9 9 O 1.21806 * 120.00128 * 185.23655 * 7 6 5 10 10 C 1.38888 * 120.03875 * 179.72742 * 2 1 3 11 11 N 1.39673 * 120.07453 * 359.97438 * 10 2 1 12 12 C 1.46900 * 111.00154 * 276.83305 * 11 10 2 13 13 C 1.50701 * 109.47364 * 185.17481 * 12 11 10 14 14 H 1.08004 * 119.99430 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00124 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00110 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99796 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46881 * 90.00236 * 17 15 13 19 19 H 1.48496 * 109.46840 * 210.00354 * 17 15 13 20 20 H 1.48493 * 109.47065 * 330.00238 * 17 15 13 21 21 H 1.08997 * 109.47334 * 270.27741 * 1 2 3 22 22 H 1.09004 * 109.47321 * 30.27516 * 1 2 3 23 23 H 1.08999 * 109.47355 * 150.27428 * 1 2 3 24 24 H 1.08004 * 119.96297 * 359.97438 * 3 2 1 25 25 H 1.07995 * 119.92552 * 179.70354 * 4 3 2 26 26 H 1.07997 * 119.96242 * 180.02562 * 5 4 3 27 27 H 1.00895 * 110.99903 * 40.78528 * 11 10 2 28 28 H 1.09003 * 109.47253 * 305.17292 * 12 11 10 29 29 H 1.09001 * 109.47274 * 65.17568 * 12 11 10 30 30 H 0.97001 * 120.00253 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1966 -0.0058 5 6 4.2765 0.0011 -0.0057 6 6 3.5916 -1.1978 -0.0004 7 7 4.3366 -2.4767 0.0002 8 8 5.5511 -2.4739 0.0924 9 8 3.7352 -3.5320 -0.0914 10 6 2.2022 -1.2023 0.0057 11 7 1.5062 -2.4133 0.0120 12 6 1.1030 -2.7817 1.3757 13 6 0.4692 -4.1489 1.3602 14 1 0.3751 -4.6898 0.4301 15 6 0.0097 -4.7091 2.5332 16 7 0.1239 -4.0501 3.6655 17 14 -0.7765 -6.4035 2.5137 18 1 0.2696 -7.4370 2.7209 19 1 -1.7841 -6.4942 3.6007 20 1 -1.4399 -6.6264 1.2040 21 1 -0.3634 0.0050 1.0276 22 1 -0.3634 0.8875 -0.5181 23 1 -0.3634 -0.8924 -0.5096 24 1 1.6585 2.1311 -0.0004 25 1 4.1192 2.1329 -0.0106 26 1 5.3564 0.0053 -0.0099 27 1 0.7075 -2.3745 -0.6032 28 1 1.9800 -2.7951 2.0229 29 1 0.3851 -2.0527 1.7517 30 1 -0.1991 -4.4444 4.4909 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309035659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:45 Heat of formation + Delta-G solvation = 26.763730 kcal Electronic energy + Delta-G solvation = -16605.464126 eV Core-core repulsion = 13790.193293 eV Total energy + Delta-G solvation = -2815.270833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46016 -39.57374 -35.99839 -35.24415 -32.93467 -32.53278 -30.03342 -27.43067 -26.39908 -25.42138 -22.44115 -21.46268 -21.11424 -18.24509 -17.83880 -17.18475 -16.67376 -16.08631 -15.63158 -14.79079 -14.52630 -13.97583 -13.64208 -13.25353 -12.60757 -12.32708 -12.15012 -12.03270 -11.62353 -11.41417 -10.86817 -10.76938 -10.74961 -10.36174 -10.27557 -10.10931 -9.48285 -9.19603 -8.80305 -8.52204 -7.68939 -6.09617 -4.11654 0.37815 1.14163 1.90961 2.12107 3.32803 3.38875 3.41516 3.48631 4.33761 4.48692 4.65527 4.73224 4.99421 5.09559 5.26113 5.28312 5.55482 5.62641 5.68758 5.89819 6.07073 6.10404 6.28489 6.53487 6.93044 7.05458 7.14188 7.63747 7.97137 7.99063 8.34778 8.45711 8.94875 9.53062 11.01501 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.008190 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.565130 B = 3418.115226 C = 4137.692192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C -0.064 4.064 4 C -0.142 4.142 5 C -0.059 4.059 6 C -0.042 4.042 7 N 0.027 4.973 8 O -0.227 6.227 9 O -0.075 6.075 10 C 0.189 3.811 11 N -0.639 5.639 12 C 0.211 3.789 13 C -0.509 4.509 14 H 0.069 0.931 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.272 1.272 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.146 0.854 27 H 0.350 0.650 28 H 0.026 0.974 29 H 0.000 1.000 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 11.925 -7.267 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.136 4.136 3 C -0.083 4.083 4 C -0.161 4.161 5 C -0.078 4.078 6 C -0.127 4.127 7 N 0.548 4.452 8 O -0.423 6.423 9 O -0.311 6.311 10 C 0.089 3.911 11 N -0.268 5.268 12 C 0.089 3.911 13 C -0.548 4.548 14 H 0.087 0.913 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.197 1.197 21 H 0.100 0.900 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.152 0.848 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.172 0.828 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.512 12.156 -7.024 14.263 hybrid contribution -0.781 -0.553 0.336 1.014 sum 1.731 11.604 -6.689 13.505 Atomic orbital electron populations 1.20783 0.89564 1.03098 1.03587 1.20677 0.97498 0.92449 1.03000 1.21290 0.94222 0.97792 0.94979 1.20976 0.94102 0.97234 1.03758 1.20899 1.01455 0.90014 0.95457 1.21133 0.91234 0.84345 1.15987 1.43381 1.00589 1.02986 0.98247 1.94444 0.96578 1.94157 1.57135 1.94709 1.69965 1.18292 1.48178 1.18766 0.90729 0.91421 0.90221 1.58316 1.30235 1.23306 1.14979 1.19632 0.95017 0.96398 0.80030 1.21065 1.37997 1.01149 0.94580 0.91261 1.24973 0.96074 0.98173 0.95235 1.69954 1.47148 1.38144 0.98608 0.86393 0.78909 0.83906 0.77603 1.20392 1.21396 1.19713 0.90046 0.91137 0.90792 0.84832 0.84353 0.83594 0.82760 0.95571 0.98218 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.01 36.00 0.32 -1.14 16 2 C -0.13 -1.96 5.88 -104.42 -0.61 -2.57 16 3 C -0.06 -0.75 9.70 -39.61 -0.38 -1.14 16 4 C -0.14 -1.62 10.04 -39.55 -0.40 -2.02 16 5 C -0.06 -0.85 9.55 -39.62 -0.38 -1.23 16 6 C -0.04 -0.78 6.86 -79.75 -0.55 -1.32 16 7 N 0.03 0.58 4.45 34.06 0.15 0.74 16 8 O -0.23 -4.78 18.46 -29.46 -0.54 -5.32 16 9 O -0.08 -1.79 16.99 -29.46 -0.50 -2.29 16 10 C 0.19 3.50 5.25 -83.79 -0.44 3.06 16 11 N -0.64 -13.46 4.14 -59.53 -0.25 -13.71 16 12 C 0.21 5.37 5.05 -4.98 -0.03 5.34 16 13 C -0.51 -14.08 9.36 -34.44 -0.32 -14.40 16 14 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 22 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 24 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 25 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.15 1.88 7.62 -52.49 -0.40 1.48 16 27 H 0.35 6.62 6.92 -39.29 -0.27 6.35 16 28 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.00 0.00 7.26 -51.93 -0.38 -0.37 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -31.64 268.84 -7.27 -38.91 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.02 Total: 0.70 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.88 Total: -13.92 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.64 Total: -38.70 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -1.04 Total: -7.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.64 -7.27 -38.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.673 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds