Wall clock time and date at job start Mon Mar 30 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 120.04148 * 2 1 4 4 C 1.38262 * 120.07852 * 180.27740 * 3 2 1 5 5 C 1.38309 * 120.14802 * 359.71890 * 4 3 2 6 6 C 1.38074 * 120.07556 * 0.02562 * 5 4 3 7 7 N 1.48005 * 120.03882 * 180.02562 * 6 5 4 8 8 O 1.21800 * 119.99941 * 5.23895 * 7 6 5 9 9 O 1.21806 * 120.00128 * 185.23655 * 7 6 5 10 10 C 1.38888 * 120.03875 * 179.72742 * 2 1 3 11 11 N 1.39673 * 120.07453 * 359.97438 * 10 2 1 12 12 C 1.46900 * 111.00154 * 276.83305 * 11 10 2 13 13 C 1.50701 * 109.47364 * 185.17481 * 12 11 10 14 14 H 1.08004 * 119.99430 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00124 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00110 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99796 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46881 * 90.00236 * 17 15 13 19 19 H 1.48496 * 109.46840 * 210.00354 * 17 15 13 20 20 H 1.48493 * 109.47065 * 330.00238 * 17 15 13 21 21 H 1.08997 * 109.47334 * 270.27741 * 1 2 3 22 22 H 1.09004 * 109.47321 * 30.27516 * 1 2 3 23 23 H 1.08999 * 109.47355 * 150.27428 * 1 2 3 24 24 H 1.08004 * 119.96297 * 359.97438 * 3 2 1 25 25 H 1.07995 * 119.92552 * 179.70354 * 4 3 2 26 26 H 1.07997 * 119.96242 * 180.02562 * 5 4 3 27 27 H 1.00895 * 110.99903 * 40.78528 * 11 10 2 28 28 H 1.09003 * 109.47253 * 305.17292 * 12 11 10 29 29 H 1.09001 * 109.47274 * 65.17568 * 12 11 10 30 30 H 0.97001 * 120.00253 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1966 -0.0058 5 6 4.2765 0.0011 -0.0057 6 6 3.5916 -1.1978 -0.0004 7 7 4.3366 -2.4767 0.0002 8 8 5.5511 -2.4739 0.0924 9 8 3.7352 -3.5320 -0.0914 10 6 2.2022 -1.2023 0.0057 11 7 1.5062 -2.4133 0.0120 12 6 1.1030 -2.7817 1.3757 13 6 0.4692 -4.1489 1.3602 14 1 0.3751 -4.6898 0.4301 15 6 0.0097 -4.7091 2.5332 16 7 0.1239 -4.0501 3.6655 17 14 -0.7765 -6.4035 2.5137 18 1 0.2696 -7.4370 2.7209 19 1 -1.7841 -6.4942 3.6007 20 1 -1.4399 -6.6264 1.2040 21 1 -0.3634 0.0050 1.0276 22 1 -0.3634 0.8875 -0.5181 23 1 -0.3634 -0.8924 -0.5096 24 1 1.6585 2.1311 -0.0004 25 1 4.1192 2.1329 -0.0106 26 1 5.3564 0.0053 -0.0099 27 1 0.7075 -2.3745 -0.6032 28 1 1.9800 -2.7951 2.0229 29 1 0.3851 -2.0527 1.7517 30 1 -0.1991 -4.4444 4.4909 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309035659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:45 Heat of formation + Delta-G solvation = 6.773257 kcal Electronic energy + Delta-G solvation = -16606.330978 eV Core-core repulsion = 13790.193293 eV Total energy + Delta-G solvation = -2816.137685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.02266 -40.86813 -37.57437 -36.85614 -34.71912 -33.96863 -31.49331 -29.01110 -27.78188 -27.02102 -24.32256 -22.86099 -22.43061 -19.65980 -19.41605 -18.94098 -18.31592 -17.74981 -16.96344 -16.61022 -15.75614 -15.45126 -14.88876 -14.66858 -14.30597 -13.72096 -13.51928 -13.30935 -13.05482 -12.83050 -12.70181 -12.46989 -12.39974 -12.13319 -12.01654 -11.97574 -11.48958 -10.71148 -10.38808 -10.10099 -9.26916 -8.26132 -6.36074 -1.04723 -0.00750 0.47078 0.67930 1.40264 1.44054 1.53968 2.31536 2.40458 3.06086 3.08463 3.49333 3.74955 4.00003 4.03887 4.04592 4.39112 4.59240 4.66105 4.79837 4.92476 4.99729 5.05159 5.13049 5.20031 5.39950 5.52714 5.67740 5.93189 6.22273 6.53992 6.76668 6.77652 7.33574 8.85432 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.008190 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.565130 B = 3418.115226 C = 4137.692192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.137 4.137 3 C -0.043 4.043 4 C -0.115 4.115 5 C -0.062 4.062 6 C -0.071 4.071 7 N 0.031 4.969 8 O -0.203 6.203 9 O -0.161 6.161 10 C 0.148 3.852 11 N -0.645 5.645 12 C 0.238 3.762 13 C -0.528 4.528 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.260 1.260 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.059 0.941 24 H 0.185 0.815 25 H 0.193 0.807 26 H 0.164 0.836 27 H 0.356 0.644 28 H -0.021 1.021 29 H -0.011 1.011 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 14.917 -8.025 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C -0.061 4.061 4 C -0.133 4.133 5 C -0.081 4.081 6 C -0.157 4.157 7 N 0.544 4.456 8 O -0.411 6.411 9 O -0.378 6.378 10 C 0.048 3.952 11 N -0.276 5.276 12 C 0.114 3.886 13 C -0.566 4.566 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.205 1.205 19 H -0.203 1.203 20 H -0.184 1.184 21 H 0.085 0.915 22 H 0.131 0.869 23 H 0.078 0.922 24 H 0.202 0.798 25 H 0.210 0.790 26 H 0.181 0.819 27 H 0.180 0.820 28 H -0.003 1.003 29 H 0.006 0.994 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.239 15.062 -7.824 17.120 hybrid contribution -0.574 -1.167 0.548 1.411 sum 1.665 13.895 -7.276 15.773 Atomic orbital electron populations 1.20826 0.88534 1.04523 1.03024 1.20935 0.98402 0.92170 1.02521 1.21909 0.94659 0.98239 0.91318 1.21640 0.94160 0.97751 0.99752 1.21347 1.02555 0.89387 0.94854 1.21555 0.91497 0.83681 1.18923 1.43885 1.00610 1.04017 0.97103 1.94364 0.97290 1.94465 1.54946 1.94714 1.70111 1.20165 1.52823 1.18980 0.90823 0.91758 0.93595 1.57932 1.30516 1.26397 1.12740 1.19046 0.92215 0.95402 0.81894 1.21422 1.38120 1.02359 0.94678 0.91583 1.25897 0.96517 1.02235 0.94762 1.70071 1.48121 1.39989 0.99246 0.85326 0.77987 0.78624 0.78338 1.20520 1.20322 1.18361 0.91531 0.86876 0.92214 0.79775 0.79030 0.81886 0.82017 1.00298 0.99382 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.71 9.01 71.23 0.64 -2.07 16 2 C -0.14 -3.77 5.88 -19.74 -0.12 -3.88 16 3 C -0.04 -0.78 9.70 22.25 0.22 -0.56 16 4 C -0.11 -1.98 10.04 22.29 0.22 -1.75 16 5 C -0.06 -1.62 9.55 22.25 0.21 -1.41 16 6 C -0.07 -2.67 6.86 36.51 0.25 -2.42 16 7 N 0.03 1.39 4.45 -46.16 -0.21 1.19 16 8 O -0.20 -8.72 18.46 18.89 0.35 -8.37 16 9 O -0.16 -8.36 16.99 18.88 0.32 -8.04 16 10 C 0.15 5.58 5.25 38.22 0.20 5.78 16 11 N -0.65 -28.89 4.14 -342.24 -1.42 -30.30 16 12 C 0.24 12.90 5.05 85.56 0.43 13.33 16 13 C -0.53 -30.60 9.36 25.60 0.24 -30.36 16 14 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 15 C 0.00 0.24 5.46 84.65 0.46 0.70 16 16 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 17 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 21 H 0.07 1.82 7.90 -2.39 -0.02 1.80 16 22 H 0.11 1.72 8.09 -2.38 -0.02 1.71 16 23 H 0.06 1.60 6.34 -2.39 -0.02 1.59 16 24 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 25 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 26 H 0.16 3.66 7.62 -2.91 -0.02 3.64 16 27 H 0.36 14.36 6.92 -89.70 -0.62 13.74 16 28 H -0.02 -1.32 8.11 -2.39 -0.02 -1.34 16 29 H -0.01 -0.63 7.26 -2.39 -0.02 -0.64 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.15 268.84 4.67 -70.48 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.55 Total: 6.91 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 2.76 Total: -22.65 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -1.34 Total: -85.62 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.67 Total: -16.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.15 4.67 -70.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.255 kcal (2) G-P(sol) polarization free energy of solvation -75.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds