Wall clock time and date at job start Mon Mar 30 2020 17:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.96036 * 2 1 4 4 C 1.38272 * 120.14681 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07563 * 0.25962 * 4 3 2 6 6 C 1.38898 * 119.91986 * 359.44373 * 5 4 3 7 7 N 1.39675 * 120.07050 * 180.27821 * 6 5 4 8 8 C 1.46500 * 120.00232 * 0.29683 * 7 6 5 9 9 C 1.50690 * 109.47264 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00060 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 119.99977 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47126 * 89.99696 * 13 11 9 15 15 H 1.48495 * 109.47280 * 209.99868 * 13 11 9 16 16 H 1.48504 * 109.47468 * 330.00098 * 13 11 9 17 17 C 1.38077 * 119.96408 * 179.97438 * 2 1 3 18 18 N 1.48009 * 120.03655 * 0.04179 * 17 2 1 19 19 O 1.21796 * 119.99985 * 89.99831 * 18 17 2 20 20 O 1.21802 * 119.99921 * 270.00195 * 18 17 2 21 21 H 1.09000 * 109.47152 * 89.99454 * 1 2 3 22 22 H 1.09000 * 109.47101 * 210.00009 * 1 2 3 23 23 H 1.09003 * 109.47088 * 330.00120 * 1 2 3 24 24 H 1.07996 * 119.93123 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.95912 * 179.97438 * 4 3 2 26 26 H 1.07990 * 120.03813 * 179.72222 * 5 4 3 27 27 H 0.96998 * 119.99563 * 180.29662 * 7 6 5 28 28 H 1.09000 * 109.46951 * 300.00115 * 8 7 6 29 29 H 1.09005 * 109.47062 * 59.99936 * 8 7 6 30 30 H 0.97001 * 120.00381 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 -0.0043 6 6 3.5859 -1.1954 0.0019 7 7 4.2867 -2.4036 0.0029 8 6 5.7517 -2.4008 0.0039 9 6 6.2567 -3.8205 0.0054 10 1 5.5565 -4.6428 0.0052 11 6 7.6128 -4.0698 0.0060 12 7 8.0536 -5.3089 0.0068 13 14 8.8239 -2.6477 0.0056 14 1 9.1443 -2.2700 1.4057 15 1 10.0682 -3.0573 -0.6937 16 1 8.2220 -1.4850 -0.6952 17 6 2.1966 -1.1962 0.0005 18 7 1.4566 -2.4780 0.0002 19 8 1.1527 -3.0055 -1.0548 20 8 1.1514 -3.0053 1.0549 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6560 2.1325 -0.0004 25 1 4.1167 2.1402 0.0001 26 1 5.3564 0.0140 -0.0085 27 1 3.8033 -3.2445 0.0029 28 1 6.1146 -1.8866 -0.8861 29 1 6.1134 -1.8858 0.8939 30 1 9.0076 -5.4843 0.0069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309212698.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:47 Heat of formation + Delta-G solvation = 16.607242 kcal Electronic energy + Delta-G solvation = -16316.748195 eV Core-core repulsion = 13501.036943 eV Total energy + Delta-G solvation = -2815.711252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.92993 -39.42370 -36.14750 -35.99206 -33.01347 -32.60447 -30.67362 -27.76931 -27.10041 -25.59999 -22.81151 -22.05661 -20.59170 -18.88523 -18.46226 -17.91199 -17.09671 -16.09088 -15.55295 -14.81169 -14.50863 -14.31818 -13.86474 -13.56765 -13.42304 -12.67640 -12.54445 -12.20894 -12.09789 -11.52442 -11.33289 -11.06765 -11.00324 -10.81504 -10.70511 -10.18733 -9.98528 -9.68685 -9.15431 -8.86052 -7.38229 -6.35568 -4.40515 0.85019 0.94478 1.43396 1.79122 3.09714 3.15919 3.17587 3.54104 3.66944 4.14750 4.47334 4.69047 4.96889 5.05642 5.09883 5.24236 5.31946 5.34401 5.57443 5.78895 5.99565 6.12948 6.26884 6.38852 6.51752 6.68568 6.75315 7.09181 7.39430 7.90082 7.91203 8.21289 8.63618 9.19794 10.76627 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.007264 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.672542 B = 3853.816451 C = 4627.801129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.008 3.992 3 C -0.191 4.191 4 C -0.032 4.032 5 C -0.199 4.199 6 C 0.280 3.720 7 N -0.707 5.707 8 C 0.220 3.780 9 C -0.550 4.550 10 H 0.080 0.920 11 C 0.080 3.920 12 N -0.884 5.884 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.264 1.264 17 C -0.130 4.130 18 N 0.029 4.971 19 O -0.149 6.149 20 O -0.152 6.152 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.400 0.600 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 14.260 -0.094 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.007 3.993 3 C -0.212 4.212 4 C -0.051 4.051 5 C -0.223 4.223 6 C 0.165 3.835 7 N -0.326 5.326 8 C 0.098 3.902 9 C -0.588 4.588 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.217 4.217 18 N 0.558 4.442 19 O -0.371 6.371 20 O -0.373 6.373 21 H 0.102 0.898 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.235 0.765 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.930 14.721 -0.089 17.218 hybrid contribution 0.442 -0.170 0.020 0.474 sum -8.488 14.551 -0.069 16.846 Atomic orbital electron populations 1.20971 0.90299 1.03804 1.03450 1.19212 0.96099 0.90118 0.93914 1.20579 0.94088 0.96093 1.10432 1.21117 0.93919 0.97686 0.92370 1.20727 1.00787 0.89672 1.11081 1.17585 0.87121 0.89274 0.89519 1.45605 1.08818 1.03760 1.74425 1.19717 0.74503 0.99643 0.96329 1.20974 0.93412 0.90177 1.54232 0.90165 1.24805 0.97971 0.95973 0.93737 1.69870 1.15052 1.18821 1.48308 0.86795 0.81052 0.82587 0.78983 1.19662 1.20523 1.18860 1.20078 0.90238 0.83007 1.28353 1.43501 0.98704 1.02065 0.99976 1.94532 1.56506 1.65209 1.20892 1.94534 1.56597 1.65269 1.20924 0.89822 0.91647 0.89833 0.84862 0.84835 0.84044 0.76508 0.95481 0.95943 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.77 36.00 0.35 -1.09 16 2 C 0.01 0.11 5.88 -104.66 -0.62 -0.50 16 3 C -0.19 -2.22 9.70 -39.54 -0.38 -2.60 16 4 C -0.03 -0.38 10.04 -39.61 -0.40 -0.78 16 5 C -0.20 -3.09 9.31 -39.38 -0.37 -3.45 16 6 C 0.28 5.13 6.65 -83.78 -0.56 4.57 16 7 N -0.71 -14.95 5.71 -59.81 -0.34 -15.29 16 8 C 0.22 5.03 3.73 -5.20 -0.02 5.01 16 9 C -0.55 -15.06 9.83 -34.44 -0.34 -15.39 16 10 H 0.08 2.40 7.84 -52.48 -0.41 1.99 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.88 -25.99 13.96 55.43 0.77 -25.22 16 13 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 17 C -0.13 -2.26 6.14 -79.76 -0.49 -2.75 16 18 N 0.03 0.55 2.43 34.06 0.08 0.63 16 19 O -0.15 -2.88 19.25 -29.46 -0.57 -3.44 16 20 O -0.15 -2.94 19.12 -29.46 -0.56 -3.50 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.82 7.31 -51.93 -0.38 0.44 16 23 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.14 2.15 6.73 -52.49 -0.35 1.80 16 27 H 0.40 8.83 7.57 -40.82 -0.31 8.52 16 28 H 0.03 0.62 7.00 -51.93 -0.36 0.25 16 29 H 0.02 0.51 7.39 -51.93 -0.38 0.12 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 269.72 15.07 4.06 4.06 Total: -1.00 -29.65 269.72 -7.19 -36.84 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.06 Total: 5.48 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.91 Total: -14.87 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.51 Total: -39.88 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -1.13 Total: -6.94 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.65 -7.19 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309212698.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.448 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds