Wall clock time and date at job start Mon Mar 30 2020 17:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.96036 * 2 1 4 4 C 1.38272 * 120.14681 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07563 * 0.25962 * 4 3 2 6 6 C 1.38898 * 119.91986 * 359.44373 * 5 4 3 7 7 N 1.39675 * 120.07050 * 180.27821 * 6 5 4 8 8 C 1.46500 * 120.00232 * 0.29683 * 7 6 5 9 9 C 1.50690 * 109.47264 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00117 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00060 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 119.99977 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47126 * 89.99696 * 13 11 9 15 15 H 1.48495 * 109.47280 * 209.99868 * 13 11 9 16 16 H 1.48504 * 109.47468 * 330.00098 * 13 11 9 17 17 C 1.38077 * 119.96408 * 179.97438 * 2 1 3 18 18 N 1.48009 * 120.03655 * 0.04179 * 17 2 1 19 19 O 1.21796 * 119.99985 * 89.99831 * 18 17 2 20 20 O 1.21802 * 119.99921 * 270.00195 * 18 17 2 21 21 H 1.09000 * 109.47152 * 89.99454 * 1 2 3 22 22 H 1.09000 * 109.47101 * 210.00009 * 1 2 3 23 23 H 1.09003 * 109.47088 * 330.00120 * 1 2 3 24 24 H 1.07996 * 119.93123 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.95912 * 179.97438 * 4 3 2 26 26 H 1.07990 * 120.03813 * 179.72222 * 5 4 3 27 27 H 0.96998 * 119.99563 * 180.29662 * 7 6 5 28 28 H 1.09000 * 109.46951 * 300.00115 * 8 7 6 29 29 H 1.09005 * 109.47062 * 59.99936 * 8 7 6 30 30 H 0.97001 * 120.00381 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 -0.0043 6 6 3.5859 -1.1954 0.0019 7 7 4.2867 -2.4036 0.0029 8 6 5.7517 -2.4008 0.0039 9 6 6.2567 -3.8205 0.0054 10 1 5.5565 -4.6428 0.0052 11 6 7.6128 -4.0698 0.0060 12 7 8.0536 -5.3089 0.0068 13 14 8.8239 -2.6477 0.0056 14 1 9.1443 -2.2700 1.4057 15 1 10.0682 -3.0573 -0.6937 16 1 8.2220 -1.4850 -0.6952 17 6 2.1966 -1.1962 0.0005 18 7 1.4566 -2.4780 0.0002 19 8 1.1527 -3.0055 -1.0548 20 8 1.1514 -3.0053 1.0549 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6560 2.1325 -0.0004 25 1 4.1167 2.1402 0.0001 26 1 5.3564 0.0140 -0.0085 27 1 3.8033 -3.2445 0.0029 28 1 6.1146 -1.8866 -0.8861 29 1 6.1134 -1.8858 0.8939 30 1 9.0076 -5.4843 0.0069 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309212698.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:47 Heat of formation + Delta-G solvation = -2.102490 kcal Electronic energy + Delta-G solvation = -16317.559509 eV Core-core repulsion = 13501.036943 eV Total energy + Delta-G solvation = -2816.522566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.34849 -40.63917 -37.63896 -37.42621 -34.90820 -33.76145 -32.16287 -29.39601 -28.26145 -26.93328 -24.54448 -23.30955 -21.92972 -20.31975 -19.93762 -19.43320 -18.72040 -17.50922 -17.11891 -16.16403 -15.86323 -15.68036 -15.26686 -14.80506 -14.73770 -14.47550 -13.55170 -13.45330 -13.19774 -12.98451 -12.86153 -12.70525 -12.48619 -12.35207 -12.09735 -11.92494 -11.77198 -11.30941 -10.91127 -10.27091 -8.75563 -8.46494 -6.58976 -0.66562 -0.18112 0.29987 0.44846 1.31339 1.34550 1.45001 2.20131 2.24627 2.45179 2.88043 3.35620 3.72566 3.97240 4.03304 4.24401 4.27605 4.42599 4.50259 4.65808 4.88126 4.88819 4.91122 5.11518 5.15030 5.25049 5.33813 5.56763 5.80615 6.13629 6.32358 6.37832 6.50530 7.06701 8.69906 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.007264 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.672542 B = 3853.816451 C = 4627.801129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.002 4.002 3 C -0.165 4.165 4 C -0.014 4.014 5 C -0.211 4.211 6 C 0.247 3.753 7 N -0.732 5.732 8 C 0.237 3.763 9 C -0.567 4.567 10 H 0.030 0.970 11 C 0.017 3.983 12 N -0.937 5.937 13 Si 0.958 3.042 14 H -0.259 1.259 15 H -0.277 1.277 16 H -0.235 1.235 17 C -0.151 4.151 18 N 0.033 4.967 19 O -0.166 6.166 20 O -0.171 6.171 21 H 0.094 0.906 22 H 0.043 0.957 23 H 0.120 0.880 24 H 0.182 0.818 25 H 0.182 0.818 26 H 0.144 0.856 27 H 0.386 0.614 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 19.225 -0.135 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.004 4.004 3 C -0.185 4.185 4 C -0.032 4.032 5 C -0.234 4.234 6 C 0.137 3.863 7 N -0.354 5.354 8 C 0.115 3.885 9 C -0.605 4.605 10 H 0.048 0.952 11 C -0.183 4.183 12 N -0.575 5.575 13 Si 0.778 3.222 14 H -0.184 1.184 15 H -0.202 1.202 16 H -0.158 1.158 17 C -0.237 4.237 18 N 0.559 4.441 19 O -0.388 6.388 20 O -0.391 6.391 21 H 0.112 0.888 22 H 0.062 0.938 23 H 0.138 0.862 24 H 0.200 0.800 25 H 0.199 0.801 26 H 0.162 0.838 27 H 0.219 0.781 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.008 19.731 -0.126 21.690 hybrid contribution 0.289 -1.647 0.032 1.672 sum -8.718 18.084 -0.095 20.076 Atomic orbital electron populations 1.21065 0.88451 1.04548 1.04332 1.19760 0.97657 0.89539 0.93417 1.21224 0.94206 0.96704 1.06408 1.21681 0.94282 0.98043 0.89214 1.21010 1.01207 0.89794 1.11417 1.17965 0.87536 0.89105 0.91702 1.45369 1.07942 1.04451 1.77633 1.19368 0.75907 0.96398 0.96829 1.21265 0.93257 0.91563 1.54379 0.95168 1.25931 1.00216 0.99355 0.92764 1.70037 1.15826 1.21814 1.49845 0.85577 0.77659 0.79057 0.79874 1.18361 1.20220 1.15840 1.20497 0.90165 0.82875 1.30140 1.43842 0.98230 1.02610 0.99448 1.94504 1.57186 1.65991 1.21082 1.94508 1.57384 1.66090 1.21136 0.88788 0.93829 0.86159 0.80027 0.80079 0.83823 0.78146 0.94730 0.94919 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.77 71.24 0.70 -1.77 16 2 C 0.00 -0.05 5.88 -19.89 -0.12 -0.17 16 3 C -0.17 -2.87 9.70 22.29 0.22 -2.65 16 4 C -0.01 -0.25 10.04 22.25 0.22 -0.03 16 5 C -0.21 -5.92 9.31 22.40 0.21 -5.71 16 6 C 0.25 8.95 6.65 38.21 0.25 9.21 16 7 N -0.73 -32.15 5.71 -343.14 -1.96 -34.11 16 8 C 0.24 10.99 3.73 85.63 0.32 11.31 16 9 C -0.57 -32.55 9.83 25.60 0.25 -32.30 16 10 H 0.03 1.96 7.84 -2.91 -0.02 1.94 16 11 C 0.02 0.97 5.47 84.66 0.46 1.44 16 12 N -0.94 -57.37 13.96 21.45 0.30 -57.07 16 13 Si 0.96 40.80 27.47 68.60 1.88 42.68 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 16 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 17 C -0.15 -5.16 6.14 36.50 0.22 -4.94 16 18 N 0.03 1.29 2.43 -46.17 -0.11 1.17 16 19 O -0.17 -6.72 19.25 18.89 0.36 -6.36 16 20 O -0.17 -6.97 19.12 18.88 0.36 -6.61 16 21 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.04 1.04 7.31 -2.39 -0.02 1.03 16 23 H 0.12 1.42 8.09 -2.39 -0.02 1.40 16 24 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 25 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 26 H 0.14 3.92 6.73 -2.92 -0.02 3.90 16 27 H 0.39 18.43 7.57 -92.71 -0.70 17.73 16 28 H 0.03 1.54 7.00 -2.39 -0.02 1.52 16 29 H 0.03 1.44 7.39 -2.38 -0.02 1.42 16 30 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -70.40 269.72 3.99 -66.41 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.41 Total: 19.50 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 2.74 Total: -25.62 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -1.77 Total: -90.01 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.72 Total: -12.97 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.68 kcal Total: -70.40 3.99 -66.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309212698.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.312 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds