Wall clock time and date at job start Mon Mar 30 2020 17:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38313 * 119.95849 * 2 1 4 4 C 1.38264 * 120.14588 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.07638 * 359.97438 * 4 3 2 6 6 N 1.48000 * 120.03774 * 179.97438 * 5 4 3 7 7 O 1.21805 * 120.00400 * 37.34463 * 6 5 4 8 8 O 1.21806 * 120.00038 * 217.35202 * 6 5 4 9 9 C 1.38885 * 119.92280 * 359.97438 * 5 4 3 10 10 N 1.39673 * 120.07254 * 180.02562 * 9 5 4 11 11 C 1.46505 * 120.00274 * 186.16713 * 10 9 5 12 12 C 1.50690 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00032 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99832 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00112 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47263 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47006 * 119.99869 * 16 14 12 19 19 H 1.48501 * 109.47191 * 239.99748 * 16 14 12 20 20 C 1.38078 * 119.96585 * 180.24607 * 2 1 3 21 21 H 1.08998 * 109.46809 * 90.00433 * 1 2 3 22 22 H 1.08999 * 109.46898 * 210.01042 * 1 2 3 23 23 H 1.09001 * 109.46836 * 330.00547 * 1 2 3 24 24 H 1.08000 * 119.92810 * 359.94236 * 3 2 1 25 25 H 1.08004 * 119.96030 * 179.97438 * 4 3 2 26 26 H 0.97003 * 120.00447 * 6.17118 * 10 9 5 27 27 H 1.08997 * 109.46969 * 59.99910 * 11 10 9 28 28 H 1.09003 * 109.46844 * 300.00621 * 11 10 9 29 29 H 0.97001 * 119.99813 * 180.02562 * 15 14 12 30 30 H 1.08003 * 120.03831 * 0.02615 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0016 6 7 5.7565 0.0156 0.0016 7 8 6.3623 0.8572 0.6407 8 8 6.3688 -0.8211 -0.6376 9 6 3.5860 -1.1952 0.0027 10 7 4.2868 -2.4034 0.0043 11 6 3.5632 -3.6702 -0.1309 12 6 4.5433 -4.8144 -0.0990 13 1 5.5997 -4.6177 0.0106 14 6 4.0917 -6.1123 -0.2107 15 7 2.8055 -6.3517 -0.3446 16 14 5.3067 -7.5306 -0.1719 17 1 6.6841 -6.9984 -0.0145 18 1 4.9874 -8.4248 0.9700 19 1 5.2144 -8.2963 -1.4410 20 6 2.1967 -1.1962 -0.0051 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5140 23 1 -0.3633 0.8901 0.5138 24 1 1.6559 2.1326 -0.0009 25 1 4.1167 2.1403 0.0001 26 1 5.2526 -2.4039 0.0950 27 1 3.0227 -3.6806 -1.0773 28 1 2.8565 -3.7745 0.6924 29 1 2.4877 -7.2648 -0.4228 30 1 1.6568 -2.1316 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309227481.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:50 Heat of formation + Delta-G solvation = 8.007594 kcal Electronic energy + Delta-G solvation = -16173.742100 eV Core-core repulsion = 13357.657940 eV Total energy + Delta-G solvation = -2816.084160 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74401 -39.33778 -36.27982 -35.49905 -33.19601 -32.51557 -29.68627 -28.28229 -26.86357 -24.56582 -23.46290 -21.39774 -21.18133 -18.85222 -18.28830 -17.44640 -16.73751 -15.83700 -15.44900 -14.64923 -14.52653 -14.08067 -13.96219 -13.43607 -13.21650 -12.35413 -12.16127 -12.01383 -11.98253 -11.32855 -11.15484 -11.04696 -10.95076 -10.71865 -10.60947 -10.30273 -9.88837 -9.55038 -9.00832 -8.70629 -7.20920 -6.34207 -4.40100 0.49038 1.55496 1.64724 1.95723 3.17449 3.25346 3.30607 3.66902 3.88012 4.27092 4.68969 4.77667 5.04123 5.14216 5.22968 5.38623 5.51625 5.56332 5.84049 5.92376 6.12059 6.14541 6.54033 6.65376 6.74840 6.95476 7.12073 7.41541 7.71307 7.80082 8.08745 8.26561 8.67438 9.27176 10.76275 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.007314 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.252793 B = 3827.459018 C = 4941.557637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.004 3.996 3 C -0.197 4.197 4 C -0.012 4.012 5 C -0.150 4.150 6 N 0.046 4.954 7 O -0.180 6.180 8 O -0.183 6.183 9 C 0.292 3.708 10 N -0.695 5.695 11 C 0.243 3.757 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.907 3.093 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.199 4.199 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.405 0.595 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.267 0.733 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 11.926 0.622 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 C -0.219 4.219 4 C -0.031 4.031 5 C -0.240 4.240 6 N 0.559 4.441 7 O -0.393 6.393 8 O -0.392 6.392 9 C 0.173 3.827 10 N -0.316 5.316 11 C 0.122 3.878 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.223 4.223 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.244 0.756 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.480 11.455 0.567 12.710 hybrid contribution 1.366 -0.836 0.026 1.601 sum -4.114 10.619 0.593 11.403 Atomic orbital electron populations 1.20900 0.90462 1.03327 1.02964 1.19967 0.96396 0.92333 0.91033 1.20563 0.92162 0.98013 1.11130 1.20502 0.94462 0.95248 0.92894 1.20367 0.77934 0.95897 1.29815 1.43506 1.03794 0.99124 0.97685 1.94462 1.70000 1.33375 1.41493 1.94507 1.69487 1.33522 1.41651 1.17705 0.92025 0.84913 0.88105 1.46295 1.10793 1.04058 1.70450 1.19412 0.93190 0.77972 0.97205 1.21193 0.93791 0.90515 1.52657 0.91467 1.24915 0.95637 0.98965 0.94232 1.69936 1.13106 1.21174 1.48406 0.86285 0.81069 0.81388 0.77869 1.19363 1.20666 1.20581 1.20696 0.90583 0.99501 1.11475 0.90314 0.90746 0.91073 0.84936 0.84590 0.75617 0.95008 0.95265 0.92318 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.01 36.01 0.36 -0.80 16 2 C 0.00 0.06 5.88 -104.65 -0.62 -0.56 16 3 C -0.20 -2.44 9.70 -39.54 -0.38 -2.82 16 4 C -0.01 -0.17 9.66 -39.61 -0.38 -0.55 16 5 C -0.15 -2.69 6.51 -79.76 -0.52 -3.21 16 6 N 0.05 0.90 4.29 34.06 0.15 1.05 16 7 O -0.18 -3.44 18.94 -29.46 -0.56 -4.00 16 8 O -0.18 -3.84 16.75 -29.46 -0.49 -4.33 16 9 C 0.29 5.56 6.61 -83.79 -0.55 5.01 16 10 N -0.70 -15.12 5.50 -59.81 -0.33 -15.45 16 11 C 0.24 5.93 4.71 -5.20 -0.02 5.90 16 12 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 13 H 0.07 1.79 7.60 -52.48 -0.40 1.39 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 16 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.20 -3.31 8.97 -39.38 -0.35 -3.67 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 23 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 25 H 0.14 1.67 8.01 -52.48 -0.42 1.25 16 26 H 0.41 9.03 5.93 -40.82 -0.24 8.79 16 27 H 0.03 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.03 0.74 7.73 -51.93 -0.40 0.34 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.15 2.49 6.73 -52.48 -0.35 2.14 16 LS Contribution 271.21 15.07 4.09 4.09 Total: -1.00 -28.55 271.21 -7.38 -35.93 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.06 Total: 4.83 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.89 Total: -13.91 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.55 Total: -38.31 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.05 Total: -8.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.55 -7.38 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309227481.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.939 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds