Wall clock time and date at job start Mon Mar 30 2020 17:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46822 * 2 1 4 4 C 1.37768 * 119.48289 * 125.00134 * 3 2 1 5 5 C 1.40518 * 119.06895 * 180.02562 * 4 3 2 6 6 C 1.47124 * 120.94375 * 180.02562 * 5 4 3 7 7 O 1.35160 * 119.99627 * 359.97438 * 6 5 4 8 8 N 1.32497 * 120.00190 * 179.97438 * 6 5 4 9 9 C 1.32673 * 120.00409 * 185.30992 * 8 6 5 10 10 H 1.08004 * 119.99722 * 5.14804 * 9 8 6 11 11 C 1.40682 * 120.00181 * 185.15066 * 9 8 6 12 12 N 1.30595 * 120.00363 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46872 * 89.99935 * 13 11 9 15 15 H 1.48501 * 109.46953 * 209.99855 * 13 11 9 16 16 H 1.48500 * 109.46935 * 329.99908 * 13 11 9 17 17 C 1.40233 * 118.11583 * 0.02562 * 5 4 3 18 18 C 1.38586 * 118.88598 * 359.97438 * 17 5 4 19 19 O 1.35700 * 119.59573 * 179.97438 * 18 17 5 20 20 N 1.32020 * 119.48983 * 305.02720 * 3 2 1 21 21 H 1.08996 * 109.47128 * 59.99721 * 1 2 3 22 22 H 1.08998 * 109.46645 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47027 * 299.99265 * 1 2 3 24 24 H 1.09001 * 109.47299 * 240.00771 * 2 1 3 25 25 H 1.08996 * 109.47128 * 120.00279 * 2 1 3 26 26 H 1.08007 * 120.46751 * 0.04133 * 4 3 2 27 27 H 0.96693 * 113.99734 * 85.00266 * 7 6 5 28 28 H 0.96993 * 120.00159 * 180.02562 * 12 11 9 29 29 H 1.07996 * 120.55632 * 179.72712 * 17 5 4 30 30 H 0.96694 * 113.99628 * 90.00703 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9069 1.8309 0.9824 5 6 3.3693 3.1578 0.9744 6 6 4.3043 3.6393 2.0032 7 8 4.7302 2.8015 2.9745 8 7 4.7288 4.8941 1.9775 9 6 5.6513 5.3002 2.8402 10 1 6.1165 4.5898 3.5076 11 6 6.0236 6.6561 2.8856 12 7 5.4616 7.5151 2.0783 13 14 7.3221 7.2279 4.1008 14 1 8.6637 7.1373 3.4707 15 1 7.0514 8.6355 4.4887 16 1 7.2834 6.3652 5.3090 17 6 2.9142 4.0100 -0.0420 18 6 2.0343 3.5117 -0.9897 19 8 1.5845 4.3239 -1.9793 20 7 1.6270 2.2534 -0.9410 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.2327 1.1420 1.7478 27 1 5.4911 2.2609 2.7218 28 1 5.7185 8.4498 2.1094 29 1 3.2409 5.0386 -0.0833 30 1 2.1363 4.3192 -2.7733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330750102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:35:56 Heat of formation + Delta-G solvation = -60.004007 kcal Electronic energy + Delta-G solvation = -15910.260542 eV Core-core repulsion = 13091.227177 eV Total energy + Delta-G solvation = -2819.033365 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47704 -37.15789 -36.42003 -34.47734 -33.25775 -31.93409 -30.97952 -28.54986 -25.90299 -23.98312 -22.46562 -21.53763 -19.35971 -17.88982 -17.68693 -16.42482 -15.62551 -15.45281 -14.77724 -14.54694 -14.15826 -13.74500 -13.62939 -13.43798 -12.55060 -12.43940 -11.95884 -11.82394 -11.47109 -11.37501 -11.15090 -10.85552 -10.78229 -10.64285 -10.54108 -9.65119 -9.43491 -8.50790 -8.37226 -7.99053 -7.93736 -7.52877 -4.77056 1.89308 1.99825 2.67675 2.72940 2.80727 3.43679 3.45355 4.27797 4.59460 5.09733 5.21989 5.37491 5.60071 5.71265 5.84507 6.05498 6.12474 6.17826 6.26124 6.32699 6.37557 6.54114 6.59546 6.68434 6.94394 7.26622 7.43664 7.53562 7.61532 8.23803 8.36812 8.86494 8.96658 9.39188 10.19573 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.037287 B = 0.005958 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.750232 B = 4698.462806 C = 5365.312852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C 0.148 3.852 4 C -0.223 4.223 5 C 0.103 3.897 6 C -0.045 4.045 7 O -0.503 6.503 8 N -0.317 5.317 9 C -0.187 4.187 10 H 0.076 0.924 11 C 0.062 3.938 12 N -0.706 5.706 13 Si 0.942 3.058 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.251 1.251 17 C -0.211 4.211 18 C 0.304 3.696 19 O -0.490 6.490 20 N -0.552 5.552 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.325 0.675 28 H 0.297 0.703 29 H 0.139 0.861 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -4.777 -1.695 5.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C 0.013 3.987 4 C -0.246 4.246 5 C 0.094 3.906 6 C -0.227 4.227 7 O -0.304 6.304 8 N -0.041 5.041 9 C -0.353 4.353 10 H 0.094 0.906 11 C -0.169 4.169 12 N -0.326 5.326 13 Si 0.763 3.237 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.174 1.174 17 C -0.234 4.234 18 C 0.128 3.872 19 O -0.295 6.295 20 N -0.275 5.275 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.175 0.825 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.918 -3.925 -2.242 4.613 hybrid contribution 2.208 -0.108 0.972 2.415 sum 1.290 -4.034 -1.269 4.421 Atomic orbital electron populations 1.21639 0.94860 1.00700 1.02616 1.20366 0.96437 0.91438 1.02118 1.20433 0.93416 0.94543 0.90349 1.21684 1.04053 0.96860 1.01957 1.18661 0.90704 0.91216 0.90022 1.19764 1.14161 0.87270 1.01476 1.85001 1.49557 1.55990 1.39823 1.67690 1.05529 1.13361 1.17480 1.20938 1.10449 0.93327 1.10612 0.90627 1.26809 0.97472 0.96032 0.96609 1.69632 1.30912 1.04856 1.27244 0.85697 0.79053 0.79029 0.79966 1.18276 1.19007 1.17394 1.21987 1.01288 1.02348 0.97749 1.18875 0.91733 0.86599 0.89964 1.84753 1.54827 1.62629 1.27295 1.66592 1.28764 1.04061 1.28055 0.91777 0.93113 0.93063 0.90944 0.90898 0.85908 0.82463 0.89134 0.84359 0.75708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.77 37.16 0.36 -1.63 16 2 C -0.07 -1.00 6.33 -27.88 -0.18 -1.17 16 3 C 0.15 2.93 6.17 -82.68 -0.51 2.42 16 4 C -0.22 -4.76 9.30 -38.89 -0.36 -5.12 16 5 C 0.10 2.49 5.91 -104.68 -0.62 1.88 16 6 C -0.04 -1.17 7.71 -13.66 -0.11 -1.28 16 7 O -0.50 -12.14 11.58 -17.18 -0.20 -12.34 16 8 N -0.32 -8.70 9.21 -10.34 -0.10 -8.79 16 9 C -0.19 -4.75 9.57 -16.27 -0.16 -4.90 16 10 H 0.08 1.86 7.02 -52.48 -0.37 1.49 16 11 C 0.06 1.40 5.53 -17.15 -0.09 1.30 16 12 N -0.71 -16.63 13.58 55.59 0.76 -15.87 16 13 Si 0.94 16.06 29.57 -169.99 -5.03 11.03 16 14 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 15 H -0.27 -4.33 7.11 56.52 0.40 -3.93 16 16 H -0.25 -4.28 7.11 56.52 0.40 -3.88 16 17 C -0.21 -5.00 9.61 -38.70 -0.37 -5.37 16 18 C 0.30 6.63 7.74 -17.20 -0.13 6.50 16 19 O -0.49 -9.33 13.56 -18.80 -0.25 -9.59 16 20 N -0.55 -11.72 9.87 -9.66 -0.10 -11.82 16 21 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 26 H 0.12 2.42 7.59 -52.48 -0.40 2.03 16 27 H 0.32 6.52 9.06 45.56 0.41 6.93 16 28 H 0.30 6.00 8.29 -40.82 -0.34 5.66 16 29 H 0.14 3.45 7.65 -52.49 -0.40 3.05 16 30 H 0.39 5.26 9.06 45.56 0.41 5.67 16 LS Contribution 275.22 15.07 4.15 4.15 Total: -1.00 -30.71 275.22 -4.50 -35.21 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -1.56 Total: 15.39 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.16 Total: -7.37 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.56 Total: -36.48 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.45 Total: -21.92 kcal Atomic # 14 Polarization: 16.06 SS G_CDS: -5.03 Total: 11.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.71 -4.50 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330750102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.794 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds