Wall clock time and date at job start Mon Mar 30 2020 17:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33674 * 126.28031 * 2 1 4 4 C 1.30627 * 109.01192 * 180.14655 * 3 2 1 5 5 C 1.50697 * 125.41403 * 179.83489 * 4 3 2 6 6 C 1.53000 * 117.49504 * 171.10127 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 O 1.33701 * 109.16853 * 359.57543 * 4 3 2 9 9 C 1.35353 * 107.68283 * 0.25814 * 8 4 3 10 10 C 1.46589 * 126.65372 * 180.02562 * 9 8 4 11 11 O 1.21721 * 119.99964 * 179.97438 * 10 9 8 12 12 N 1.34781 * 119.99513 * 359.97438 * 10 9 8 13 13 C 1.36856 * 119.99311 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00307 * 359.97438 * 13 12 10 15 15 C 1.39028 * 119.99478 * 179.97438 * 13 12 10 16 16 N 1.31384 * 120.00395 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99865 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46835 * 90.00141 * 17 15 13 19 19 H 1.48501 * 109.47476 * 209.99786 * 17 15 13 20 20 H 1.48497 * 109.47441 * 330.00435 * 17 15 13 21 21 H 1.08997 * 109.47165 * 270.32602 * 1 2 3 22 22 H 1.08997 * 109.47233 * 30.32500 * 1 2 3 23 23 H 1.09006 * 109.47369 * 150.32501 * 1 2 3 24 24 H 1.08990 * 115.56356 * 25.41298 * 5 4 3 25 25 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 26 26 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 27 27 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 28 28 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 29 29 H 0.96997 * 120.00716 * 359.97438 * 12 10 9 30 30 H 0.97005 * 119.99973 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0776 0.0000 4 6 3.5453 0.6898 -0.0032 5 6 4.7438 1.6034 -0.0078 6 6 6.1190 0.9655 0.1989 7 6 5.7171 1.4860 -1.1825 8 8 3.5897 -0.6464 0.0041 9 6 2.3144 -1.1001 0.0062 10 6 1.8842 -2.5014 0.0142 11 8 0.6978 -2.7738 0.0158 12 7 2.8022 -3.4882 0.0198 13 6 2.4005 -4.7964 0.0268 14 1 1.3479 -5.0381 0.0282 15 6 3.3475 -5.8143 0.0320 16 7 4.6280 -5.5203 0.0308 17 14 2.7992 -7.6000 0.0422 18 1 2.6533 -8.0809 -1.3552 19 1 3.8133 -8.4252 0.7463 20 1 1.4951 -7.7135 0.7434 21 1 -0.3633 0.0058 1.0276 22 1 -0.3633 0.8870 -0.5189 23 1 -0.3634 -0.8929 -0.5088 24 1 4.5806 2.5953 0.4134 25 1 6.8606 1.5379 0.7562 26 1 6.1570 -0.1149 0.3379 27 1 5.4904 0.7479 -1.9520 28 1 6.1942 2.4007 -1.5341 29 1 3.7476 -3.2711 0.0182 30 1 5.2887 -6.2305 0.0348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331753355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:14 Heat of formation + Delta-G solvation = 2.298806 kcal Electronic energy + Delta-G solvation = -16209.129109 eV Core-core repulsion = 13392.797397 eV Total energy + Delta-G solvation = -2816.331712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.86033 -38.14986 -37.12900 -34.94052 -34.07834 -31.49167 -30.86717 -27.48668 -25.49285 -24.08319 -22.51112 -21.19022 -20.69225 -19.54337 -18.26060 -16.96554 -16.43073 -16.06310 -15.16624 -14.87886 -14.19422 -13.87657 -13.39459 -13.08298 -12.79056 -12.73978 -12.21116 -11.76451 -11.67036 -11.63673 -11.27049 -11.14896 -10.64615 -10.54885 -10.44613 -10.33210 -10.27546 -9.76813 -8.79860 -8.29441 -8.08785 -6.69263 -4.02678 1.44196 2.78485 2.95065 3.10469 3.15149 3.21202 3.77234 3.96428 4.06987 4.09587 4.65191 4.78964 4.86465 5.03315 5.12308 5.36978 5.52607 5.54299 5.75724 5.91048 6.02892 6.09786 6.20476 6.23612 6.36551 6.46265 6.84668 7.29876 7.75697 8.10183 8.34276 8.88533 9.23853 9.75569 10.46454 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.007070 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.906393 B = 3959.299376 C = 4928.854473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.029 3.971 3 N -0.480 5.480 4 C 0.206 3.794 5 C -0.067 4.067 6 C -0.164 4.164 7 C -0.161 4.161 8 O -0.191 6.191 9 C -0.059 4.059 10 C 0.501 3.499 11 O -0.573 6.573 12 N -0.527 5.527 13 C -0.298 4.298 14 H 0.113 0.887 15 C 0.027 3.973 16 N -0.880 5.880 17 Si 0.939 3.061 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.142 0.858 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.398 0.602 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 10.085 -0.504 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 N -0.210 5.210 4 C 0.001 3.999 5 C -0.085 4.085 6 C -0.202 4.202 7 C -0.199 4.199 8 O -0.077 6.077 9 C -0.115 4.115 10 C 0.288 3.712 11 O -0.461 6.461 12 N -0.159 5.159 13 C -0.428 4.428 14 H 0.130 0.870 15 C -0.178 4.178 16 N -0.519 5.519 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.189 1.189 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.114 0.886 24 H 0.160 0.840 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.232 0.768 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.724 10.323 -0.488 10.687 hybrid contribution 0.710 -1.346 0.044 1.522 sum 3.435 8.977 -0.444 9.622 Atomic orbital electron populations 1.20196 0.85860 1.03515 1.02837 1.21789 0.97994 0.86358 1.03439 1.70070 1.00193 1.31598 1.19099 1.24925 0.94014 0.79395 1.01578 1.20138 0.84514 0.97342 1.06556 1.23130 0.95238 1.02419 0.99414 1.23122 1.00909 1.03878 0.91954 1.84438 1.30695 1.22958 1.69640 1.23779 0.80031 0.97460 1.10234 1.15924 0.86416 0.80513 0.88352 1.90670 1.15564 1.80618 1.59237 1.41911 1.08658 1.05728 1.59588 1.19906 0.95397 0.80302 1.47156 0.86953 1.25487 0.94727 1.01410 0.96213 1.69622 1.00364 1.35035 1.46841 0.85710 0.78760 0.80292 0.78754 1.19947 1.20562 1.18935 0.91081 0.91694 0.88648 0.84008 0.87423 0.87469 0.88100 0.87408 0.76768 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 9.87 36.00 0.36 -0.84 16 2 C 0.03 0.60 7.16 -82.43 -0.59 0.01 16 3 N -0.48 -9.33 11.26 -7.04 -0.08 -9.41 16 4 C 0.21 3.70 7.81 -12.79 -0.10 3.60 16 5 C -0.07 -0.85 6.33 -91.77 -0.58 -1.43 16 6 C -0.16 -1.80 10.16 -26.73 -0.27 -2.07 16 7 C -0.16 -1.71 10.23 -26.73 -0.27 -1.98 16 8 O -0.19 -3.92 10.24 4.30 0.04 -3.88 16 9 C -0.06 -1.33 7.18 -36.85 -0.26 -1.60 16 10 C 0.50 12.77 7.73 -12.89 -0.10 12.67 16 11 O -0.57 -15.58 14.37 5.17 0.07 -15.51 16 12 N -0.53 -13.82 5.27 -12.20 -0.06 -13.88 16 13 C -0.30 -8.13 9.68 -15.02 -0.15 -8.27 16 14 H 0.11 3.13 7.15 -52.49 -0.38 2.76 16 15 C 0.03 0.68 5.50 -17.45 -0.10 0.59 16 16 N -0.88 -23.18 13.05 55.50 0.72 -22.45 16 17 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.09 1.85 6.47 -51.93 -0.34 1.51 16 24 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.11 1.37 7.94 -51.93 -0.41 0.95 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.40 10.23 7.69 -40.82 -0.31 9.92 16 30 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -30.23 273.13 -5.38 -35.62 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -3.11 Total: 9.73 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.07 Total: 0.66 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.58 Total: -45.74 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.12 Total: -19.38 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.23 -5.38 -35.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331753355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.915 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds