Wall clock time and date at job start Mon Mar 30 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00538 * 2 1 4 4 H 1.08004 * 120.00668 * 176.32769 * 3 2 1 5 5 C 1.38995 * 119.99970 * 356.04899 * 3 2 1 6 6 N 1.31402 * 119.99429 * 5.88269 * 5 3 2 7 7 Si 1.86797 * 119.99980 * 185.87844 * 5 3 2 8 8 H 1.48496 * 109.47395 * 0.02562 * 7 5 3 9 9 H 1.48510 * 109.46695 * 120.00571 * 7 5 3 10 10 H 1.48498 * 109.47321 * 240.00003 * 7 5 3 11 11 C 1.34780 * 119.99836 * 179.97438 * 2 1 3 12 12 O 1.21653 * 119.99878 * 5.83909 * 11 2 1 13 13 C 1.47324 * 120.00252 * 185.83556 * 11 2 1 14 14 N 1.36073 * 126.45758 * 6.15941 * 13 11 2 15 15 C 1.29940 * 108.48595 * 179.85866 * 14 13 11 16 16 O 1.34046 * 109.26116 * 0.41534 * 15 14 13 17 17 C 1.34272 * 108.23630 * 359.73794 * 16 15 14 18 18 C 1.50697 * 126.53735 * 179.97438 * 17 16 15 19 19 C 1.52994 * 117.50039 * 8.77314 * 18 17 16 20 20 C 1.52997 * 117.49897 * 300.10962 * 18 17 16 21 21 H 1.09004 * 109.46628 * 56.21753 * 1 2 3 22 22 H 1.08996 * 109.47163 * 176.22375 * 1 2 3 23 23 H 1.08993 * 109.46713 * 296.22435 * 1 2 3 24 24 H 0.97007 * 119.99460 * 179.97438 * 6 5 3 25 25 H 1.07997 * 125.36427 * 180.14929 * 15 14 13 26 26 H 1.09004 * 115.54881 * 154.44570 * 18 17 16 27 27 H 1.09005 * 117.49850 * 0.02562 * 19 18 17 28 28 H 1.09000 * 117.50159 * 145.01338 * 19 18 17 29 29 H 1.08993 * 117.50055 * 214.97632 * 20 18 17 30 30 H 1.08998 * 117.49506 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2282 1.1868 0.0599 5 6 1.4574 2.3882 -0.0829 6 7 0.1440 2.3938 -0.0448 7 14 2.3941 3.9958 -0.2485 8 1 3.8529 3.7191 -0.2682 9 1 2.0013 4.6696 -1.5124 10 1 2.0724 4.8770 0.9027 11 6 2.1389 -1.1672 0.0005 12 8 1.5353 -2.2181 -0.1062 13 6 3.6064 -1.1706 0.1302 14 7 4.3991 -0.0916 0.3731 15 6 5.6347 -0.4909 0.4220 16 8 5.6810 -1.8132 0.2075 17 6 4.4258 -2.2532 0.0237 18 6 4.0041 -3.6741 -0.2490 19 6 5.0707 -4.7638 -0.1249 20 6 4.5591 -4.3468 -1.5061 21 1 -0.3633 0.5715 -0.8542 22 1 -0.3633 -1.0254 -0.0677 23 1 -0.3632 0.4541 0.9219 24 1 -0.3393 3.2330 -0.1023 25 1 6.4899 0.1435 0.6025 26 1 2.9874 -3.9285 0.0507 27 1 6.0775 -4.4531 0.1544 28 1 4.7559 -5.7352 0.2562 29 1 3.9079 -5.0441 -2.0330 30 1 5.2290 -3.7615 -2.1360 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331771408.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:18 Heat of formation + Delta-G solvation = 21.710696 kcal Electronic energy + Delta-G solvation = -16741.503310 eV Core-core repulsion = 13926.013361 eV Total energy + Delta-G solvation = -2815.489949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.24776 -40.20289 -38.12139 -36.75376 -35.64014 -33.35027 -31.15302 -28.64891 -26.79298 -24.64173 -24.12676 -23.26544 -21.79861 -21.12219 -19.67927 -17.89087 -17.63902 -17.43222 -16.59008 -16.28360 -15.91890 -15.84464 -15.64361 -14.64223 -14.36507 -13.73411 -13.44586 -13.29368 -13.01939 -12.76091 -12.54212 -12.44542 -12.18442 -12.01942 -11.90001 -11.46582 -11.06446 -10.86225 -10.40594 -10.00136 -9.58198 -8.21987 -5.79180 0.21981 1.24484 1.44356 1.50922 1.60965 1.70068 2.29902 2.46115 2.83610 2.93702 3.24713 3.42652 3.57480 3.88602 4.07052 4.26025 4.32438 4.63259 4.71386 4.74352 4.85731 4.99258 5.10259 5.19432 5.21837 5.26534 5.37096 5.70656 5.90036 6.63664 6.72611 7.13720 7.57520 7.90694 8.73290 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.008462 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.612473 B = 3308.016348 C = 4016.827130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.436 5.436 3 C -0.354 4.354 4 H 0.166 0.834 5 C -0.027 4.027 6 N -0.909 5.909 7 Si 1.000 3.000 8 H -0.252 1.252 9 H -0.279 1.279 10 H -0.278 1.278 11 C 0.493 3.507 12 O -0.634 6.634 13 C -0.061 4.061 14 N -0.484 5.484 15 C 0.176 3.824 16 O -0.197 6.197 17 C 0.044 3.956 18 C -0.108 4.108 19 C -0.142 4.142 20 C -0.153 4.153 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.267 0.733 25 H 0.305 0.695 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -6.554 -0.532 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.150 5.150 3 C -0.482 4.482 4 H 0.182 0.818 5 C -0.226 4.226 6 N -0.551 5.551 7 Si 0.823 3.177 8 H -0.176 1.176 9 H -0.205 1.205 10 H -0.203 1.203 11 C 0.283 3.717 12 O -0.525 6.525 13 C -0.179 4.179 14 N -0.213 5.213 15 C -0.051 4.051 16 O -0.084 6.084 17 C -0.012 4.012 18 C -0.126 4.126 19 C -0.178 4.178 20 C -0.190 4.190 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.320 0.680 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.958 -6.252 -0.508 13.503 hybrid contribution -0.238 0.668 -0.008 0.709 sum 11.720 -5.584 -0.516 12.993 Atomic orbital electron populations 1.21467 0.79745 0.97317 1.02498 1.44008 1.06631 1.05885 1.58449 1.22103 0.96845 0.82193 1.47092 0.81774 1.26487 0.96653 1.03361 0.96087 1.70386 1.07445 1.27835 1.49386 0.84743 0.79103 0.76227 0.77599 1.17577 1.20510 1.20331 1.16954 0.85350 0.83639 0.85758 1.90526 1.69156 1.31684 1.61161 1.21323 0.95242 0.89776 1.11548 1.70749 1.02556 1.29969 1.18024 1.29354 0.98239 0.79199 0.98282 1.84251 1.29075 1.26679 1.68398 1.22633 0.80593 0.96384 1.01637 1.20615 1.00503 0.83916 1.07605 1.23194 0.97723 0.98030 0.98898 1.23165 1.02967 1.02219 0.90642 0.91535 0.94411 0.93358 0.92297 0.67992 0.85363 0.87360 0.85627 0.86296 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 7.33 8.89 127.77 1.14 8.46 16 2 N -0.44 -25.00 3.02 -662.73 -2.00 -27.00 16 3 C -0.35 -19.87 9.33 84.08 0.78 -19.09 16 4 H 0.17 8.80 4.13 -11.94 -0.05 8.75 16 5 C -0.03 -1.45 5.45 84.94 0.46 -0.98 16 6 N -0.91 -50.54 9.44 21.67 0.20 -50.33 16 7 Si 1.00 42.25 29.56 68.60 2.03 44.28 16 8 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 11 C 0.49 27.07 7.62 86.63 0.66 27.73 16 12 O -0.63 -35.70 14.21 -4.20 -0.06 -35.76 16 13 C -0.06 -2.84 6.69 40.40 0.27 -2.57 16 14 N -0.48 -20.36 7.83 -305.16 -2.39 -22.75 16 15 C 0.18 5.12 13.19 130.52 1.72 6.84 16 16 O -0.20 -6.04 10.50 0.28 0.00 -6.04 16 17 C 0.04 1.68 6.90 25.21 0.17 1.86 16 18 C -0.11 -3.54 5.66 -11.54 -0.07 -3.60 16 19 C -0.14 -3.10 10.18 30.62 0.31 -2.79 16 20 C -0.15 -3.76 10.24 30.62 0.31 -3.45 16 21 H 0.07 3.76 6.70 -2.38 -0.02 3.75 16 22 H 0.04 2.00 6.91 -2.39 -0.02 1.99 16 23 H 0.05 2.71 7.36 -2.39 -0.02 2.70 16 24 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 25 H 0.31 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.13 4.90 6.58 -2.38 -0.02 4.89 16 27 H 0.11 2.16 8.01 -2.38 -0.02 2.14 16 28 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.05 260.50 4.69 -67.36 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.13 Total: 17.84 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.77 Total: 12.40 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -4.19 Total: -100.08 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.06 Total: -41.80 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -72.05 4.69 -67.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331771408.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.075 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds