Wall clock time and date at job start Mon Mar 30 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46950 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21610 * 120.00228 * 359.73130 * 11 10 9 13 13 C 1.47426 * 119.99872 * 180.02562 * 11 10 9 14 14 N 1.36064 * 126.44821 * 359.41438 * 13 11 10 15 15 C 1.29931 * 108.47762 * 179.82217 * 14 13 11 16 16 O 1.34051 * 109.24097 * 0.44904 * 15 14 13 17 17 C 1.34253 * 108.22744 * 359.71710 * 16 15 14 18 18 C 1.50702 * 126.52366 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.50099 * 8.74914 * 18 17 16 20 20 C 1.52999 * 117.50065 * 300.08662 * 18 17 16 21 21 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47406 * 60.00023 * 9 7 2 23 23 H 1.08993 * 109.47274 * 299.99650 * 9 7 2 24 24 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 25 25 H 1.08007 * 125.37840 * 180.16209 * 15 14 13 26 26 H 1.09005 * 115.54578 * 154.42053 * 18 17 16 27 27 H 1.09006 * 117.49694 * 359.97438 * 19 18 17 28 28 H 1.08999 * 117.49998 * 145.01804 * 19 18 17 29 29 H 1.09000 * 117.50012 * 214.98129 * 20 18 17 30 30 H 1.08999 * 117.49441 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5581 -5.1056 0.0065 13 6 2.7117 -6.0039 0.0016 14 7 4.0689 -5.9071 -0.0095 15 6 4.5674 -7.1070 -0.0010 16 8 3.5681 -8.0005 0.0056 17 6 2.4051 -7.3298 0.0074 18 6 1.0231 -7.9308 0.0149 19 6 0.9110 -9.4417 0.2276 20 6 0.6422 -8.8410 -1.1544 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4354 0.0009 25 1 5.6205 -7.3466 -0.0039 26 1 0.2398 -7.3031 0.4400 27 1 1.8368 -10.0012 0.3617 28 1 0.0537 -9.8082 0.7924 29 1 -0.3918 -8.8125 -1.4983 30 1 1.3910 -9.0047 -1.9294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331788943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:20 Heat of formation + Delta-G solvation = 5.570890 kcal Electronic energy + Delta-G solvation = -15942.054821 eV Core-core repulsion = 13125.864998 eV Total energy + Delta-G solvation = -2816.189824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.35087 -38.60394 -37.24647 -34.65827 -34.17711 -32.24796 -30.20426 -27.44111 -24.38989 -23.58684 -22.57064 -22.18638 -20.63110 -19.88656 -18.10173 -16.75974 -16.53749 -15.95977 -15.37797 -15.18643 -14.84934 -14.20979 -14.15829 -13.55585 -12.89203 -12.34175 -11.93436 -11.92146 -11.72768 -11.23489 -11.05307 -10.97819 -10.87759 -10.85734 -10.46541 -10.28566 -9.36732 -9.29793 -8.74531 -8.66520 -7.85112 -6.14242 -4.20397 1.21175 2.26681 2.56123 3.26525 3.33499 3.37578 3.66418 3.89335 3.94962 4.23029 4.38275 4.42331 4.75087 4.82127 5.16106 5.22273 5.36919 5.45904 5.60055 5.64852 5.80451 5.93846 6.12684 6.26993 7.28852 7.39506 7.52022 7.55952 7.74135 7.98546 8.64670 8.78289 9.06709 9.45766 10.96169 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.005301 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.431852 B = 5281.150249 C = 5856.578908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.690 5.690 11 C 0.581 3.419 12 O -0.550 6.550 13 C -0.054 4.054 14 N -0.459 5.459 15 C 0.165 3.835 16 O -0.204 6.204 17 C 0.058 3.942 18 C -0.077 4.077 19 C -0.172 4.172 20 C -0.159 4.159 21 H 0.265 0.735 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.400 0.600 25 H 0.253 0.747 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -17.184 -0.336 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.337 5.337 11 C 0.365 3.635 12 O -0.429 6.429 13 C -0.174 4.174 14 N -0.188 5.188 15 C -0.064 4.064 16 O -0.091 6.091 17 C 0.002 3.998 18 C -0.095 4.095 19 C -0.209 4.209 20 C -0.196 4.196 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.234 0.766 25 H 0.269 0.731 26 H 0.175 0.825 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.796 -16.606 -0.346 17.592 hybrid contribution 0.844 0.484 0.000 0.973 sum 6.640 -16.122 -0.345 17.439 Atomic orbital electron populations 1.69984 1.06100 1.27186 1.49168 1.24941 0.94917 0.99443 0.94681 0.86343 0.79925 0.82859 0.77709 1.19564 1.20795 1.20799 1.21274 0.93451 0.90312 1.52922 0.91700 1.19208 0.88266 0.81810 0.97970 1.46338 1.11947 1.05344 1.70034 1.16786 0.86229 0.82182 0.78318 1.90726 1.15001 1.84507 1.52716 1.21870 0.90468 0.94059 1.11045 1.70789 1.07458 1.24553 1.15966 1.27956 0.95014 0.81512 1.01887 1.84278 1.14930 1.39915 1.69968 1.22571 0.86130 0.90171 1.00950 1.20765 0.89305 0.93472 1.06001 1.23089 1.03938 0.93987 0.99906 1.23067 1.03343 1.01627 0.91539 0.92519 0.95192 0.95177 0.76645 0.73119 0.82508 0.88320 0.87630 0.87328 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 8 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.69 -16.03 5.55 -62.56 -0.35 -16.38 16 11 C 0.58 12.84 7.81 -12.52 -0.10 12.75 16 12 O -0.55 -13.25 14.88 5.27 0.08 -13.17 16 13 C -0.05 -0.99 6.99 -83.02 -0.58 -1.57 16 14 N -0.46 -7.38 11.06 -11.48 -0.13 -7.51 16 15 C 0.16 1.91 13.19 51.96 0.69 2.59 16 16 O -0.20 -2.62 10.50 6.52 0.07 -2.56 16 17 C 0.06 0.89 6.90 -35.08 -0.24 0.65 16 18 C -0.08 -1.06 5.61 -91.77 -0.51 -1.57 16 19 C -0.17 -1.72 10.18 -26.70 -0.27 -1.99 16 20 C -0.16 -1.73 10.24 -26.69 -0.27 -2.00 16 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.40 8.62 8.05 -40.82 -0.33 8.29 16 25 H 0.25 1.41 8.06 -52.48 -0.42 0.99 16 26 H 0.16 2.43 6.66 -51.93 -0.35 2.08 16 27 H 0.10 0.92 8.01 -51.93 -0.42 0.51 16 28 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 274.60 15.07 4.14 4.14 Total: -1.00 -32.95 274.60 -5.37 -38.33 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.16 Total: 4.71 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.74 Total: 1.84 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.26 Total: -49.51 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.15 Total: -15.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.95 -5.37 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331788943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.897 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds