Wall clock time and date at job start Mon Mar 30 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99700 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46950 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21610 * 120.00228 * 359.73130 * 11 10 9 13 13 C 1.47426 * 119.99872 * 180.02562 * 11 10 9 14 14 N 1.36064 * 126.44821 * 359.41438 * 13 11 10 15 15 C 1.29931 * 108.47762 * 179.82217 * 14 13 11 16 16 O 1.34051 * 109.24097 * 0.44904 * 15 14 13 17 17 C 1.34253 * 108.22744 * 359.71710 * 16 15 14 18 18 C 1.50702 * 126.52366 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.50099 * 8.74914 * 18 17 16 20 20 C 1.52999 * 117.50065 * 300.08662 * 18 17 16 21 21 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47406 * 60.00023 * 9 7 2 23 23 H 1.08993 * 109.47274 * 299.99650 * 9 7 2 24 24 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 25 25 H 1.08007 * 125.37840 * 180.16209 * 15 14 13 26 26 H 1.09005 * 115.54578 * 154.42053 * 18 17 16 27 27 H 1.09006 * 117.49694 * 359.97438 * 19 18 17 28 28 H 1.08999 * 117.49998 * 145.01804 * 19 18 17 29 29 H 1.09000 * 117.50012 * 214.98129 * 20 18 17 30 30 H 1.08999 * 117.49441 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5581 -5.1056 0.0065 13 6 2.7117 -6.0039 0.0016 14 7 4.0689 -5.9071 -0.0095 15 6 4.5674 -7.1070 -0.0010 16 8 3.5681 -8.0005 0.0056 17 6 2.4051 -7.3298 0.0074 18 6 1.0231 -7.9308 0.0149 19 6 0.9110 -9.4417 0.2276 20 6 0.6422 -8.8410 -1.1544 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.1566 -3.4354 0.0009 25 1 5.6205 -7.3466 -0.0039 26 1 0.2398 -7.3031 0.4400 27 1 1.8368 -10.0012 0.3617 28 1 0.0537 -9.8082 0.7924 29 1 -0.3918 -8.8125 -1.4983 30 1 1.3910 -9.0047 -1.9294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331788943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:20 Heat of formation + Delta-G solvation = -20.656461 kcal Electronic energy + Delta-G solvation = -15943.192125 eV Core-core repulsion = 13125.864998 eV Total energy + Delta-G solvation = -2817.327127 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.47500 -40.39118 -38.18906 -36.21153 -35.84798 -34.33082 -31.41661 -29.48898 -26.01763 -24.66202 -24.06110 -23.32343 -21.88031 -21.44674 -19.66194 -18.21525 -17.85532 -17.36423 -17.11906 -16.52375 -16.16310 -16.06839 -15.72954 -14.81493 -14.54432 -14.05697 -14.03200 -13.36832 -12.92658 -12.76955 -12.51041 -12.42164 -12.25993 -12.05791 -11.95486 -11.55628 -11.49098 -11.01419 -10.84141 -10.04782 -9.70361 -8.31631 -6.48267 -0.00333 1.09089 1.41929 1.43543 1.48065 1.57580 2.24501 2.27189 2.46963 2.83189 3.03131 3.16502 3.34161 3.74846 3.92551 3.97724 4.13514 4.42822 4.65435 4.68759 4.91582 5.01420 5.09791 5.16424 5.18508 5.21901 5.41911 5.60829 5.79873 6.41380 6.60164 6.81885 7.16458 7.31417 8.80942 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.005301 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.431852 B = 5281.150249 C = 5856.578908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.266 3.734 10 N -0.692 5.692 11 C 0.579 3.421 12 O -0.580 6.580 13 C -0.097 4.097 14 N -0.497 5.497 15 C 0.200 3.800 16 O -0.193 6.193 17 C 0.078 3.922 18 C -0.120 4.120 19 C -0.140 4.140 20 C -0.151 4.151 21 H 0.271 0.729 22 H -0.005 1.005 23 H -0.005 1.005 24 H 0.408 0.592 25 H 0.313 0.687 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -18.598 -0.442 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.096 0.904 9 C 0.144 3.856 10 N -0.340 5.340 11 C 0.365 3.635 12 O -0.462 6.462 13 C -0.216 4.216 14 N -0.225 5.225 15 C -0.028 4.028 16 O -0.079 6.079 17 C 0.021 3.979 18 C -0.138 4.138 19 C -0.176 4.176 20 C -0.187 4.187 21 H 0.079 0.921 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.243 0.757 25 H 0.328 0.672 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.249 -18.038 -0.451 19.840 hybrid contribution 0.097 0.764 0.034 0.771 sum 8.346 -17.274 -0.417 19.188 Atomic orbital electron populations 1.70128 1.08148 1.28653 1.49738 1.26039 0.95834 1.03765 0.93609 0.85084 0.78892 0.77150 0.77934 1.18057 1.20081 1.20096 1.21595 0.94136 0.90632 1.53340 0.90406 1.18677 0.88471 0.83768 0.94674 1.46091 1.11572 1.05131 1.71210 1.17315 0.86742 0.82660 0.76734 1.90691 1.16728 1.85102 1.53692 1.21246 0.91159 0.93550 1.15598 1.70712 1.06250 1.27079 1.18486 1.29292 0.96477 0.79857 0.97205 1.84336 1.14296 1.39521 1.69787 1.22714 0.87463 0.89369 0.98354 1.20731 0.88027 0.95553 1.09496 1.23232 1.05241 0.90399 0.98754 1.23201 1.04088 0.99666 0.91783 0.92057 0.98698 0.98681 0.75653 0.67206 0.85321 0.86859 0.85723 0.86430 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.99 43.61 29.54 68.60 2.03 45.63 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.56 -32.13 9.28 25.60 0.24 -31.89 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 15.49 5.43 85.63 0.46 15.95 16 10 N -0.69 -33.89 5.55 -470.10 -2.61 -36.50 16 11 C 0.58 27.01 7.81 86.66 0.68 27.69 16 12 O -0.58 -29.97 14.88 -4.06 -0.06 -30.03 16 13 C -0.10 -3.61 6.99 40.41 0.28 -3.32 16 14 N -0.50 -15.36 11.06 -305.15 -3.37 -18.73 16 15 C 0.20 3.91 13.19 130.52 1.72 5.63 16 16 O -0.19 -4.34 10.50 0.41 0.00 -4.34 16 17 C 0.08 2.35 6.90 25.19 0.17 2.53 16 18 C -0.12 -3.23 5.61 -11.54 -0.06 -3.30 16 19 C -0.14 -2.41 10.18 30.62 0.31 -2.10 16 20 C -0.15 -3.01 10.24 30.62 0.31 -2.70 16 21 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 22 H 0.00 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.41 18.25 8.05 -92.71 -0.75 17.51 16 25 H 0.31 1.63 8.06 -2.91 -0.02 1.61 16 26 H 0.13 4.22 6.66 -2.38 -0.02 4.21 16 27 H 0.11 1.67 8.01 -2.38 -0.02 1.65 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -75.96 274.60 1.28 -74.68 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.43 Total: 16.46 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.58 Total: 9.38 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.70 Total: -111.77 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.06 Total: -34.37 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.96 1.28 -74.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331788943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.021 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds