Wall clock time and date at job start Mon Mar 30 2020 17:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34860 * 120.32964 * 2 1 4 4 N 1.35577 * 121.80087 * 179.72014 * 3 2 1 5 5 H 0.96993 * 118.80991 * 180.26318 * 4 3 2 6 6 C 1.34350 * 122.38859 * 0.53363 * 4 3 2 7 7 C 1.37991 * 120.36940 * 359.47224 * 6 4 3 8 8 C 1.47286 * 120.88282 * 180.27616 * 7 6 4 9 9 O 1.21616 * 120.00094 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00137 * 0.02562 * 8 7 6 11 11 C 1.46494 * 120.00496 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47696 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99667 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00144 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00451 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99879 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46910 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46924 * 119.99546 * 16 14 12 19 19 H 1.48490 * 109.46972 * 239.99704 * 16 14 12 20 20 C 1.41674 * 120.32921 * 179.97438 * 2 1 3 21 21 O 1.22090 * 121.06657 * 359.97438 * 20 2 1 22 22 H 1.09000 * 109.47517 * 270.02173 * 1 2 3 23 23 H 1.08998 * 109.47222 * 30.02625 * 1 2 3 24 24 H 1.09002 * 109.47036 * 150.01708 * 1 2 3 25 25 H 1.08005 * 119.10212 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.81873 * 179.75504 * 6 4 3 27 27 H 0.97005 * 119.99798 * 359.97438 * 10 8 7 28 28 H 1.09008 * 109.46560 * 299.99876 * 11 10 8 29 29 H 1.08999 * 109.47177 * 59.99402 * 11 10 8 30 30 H 0.96998 * 120.00391 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1881 1.1640 0.0000 4 7 3.5434 1.1988 0.0056 5 1 3.9888 2.0604 0.0093 6 6 4.2920 0.0832 0.0010 7 6 3.6921 -1.1595 0.0010 8 6 4.5017 -2.3898 0.0021 9 8 3.9562 -3.4768 0.0016 10 7 5.8472 -2.3111 0.0035 11 6 6.6526 -3.5348 0.0039 12 6 8.1156 -3.1734 0.0061 13 1 8.4155 -2.1359 0.0067 14 6 9.0712 -4.1673 0.0064 15 7 8.7061 -5.4307 0.0052 16 14 10.8848 -3.7192 0.0084 17 1 11.0295 -2.2412 0.0089 18 1 11.5320 -4.2808 1.2212 19 1 11.5343 -4.2793 -1.2037 20 6 2.2225 -1.2228 0.0005 21 8 1.6380 -2.2947 0.0015 22 1 -0.3634 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 1.6388 2.0940 -0.0004 26 1 5.3693 0.1594 0.0018 27 1 6.2823 -1.4441 0.0034 28 1 6.4222 -4.1210 0.8936 29 1 6.4240 -4.1206 -0.8864 30 1 9.3784 -6.1299 0.0057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334078992.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:24 Heat of formation + Delta-G solvation = -80.157090 kcal Electronic energy + Delta-G solvation = -15928.834327 eV Core-core repulsion = 13108.927059 eV Total energy + Delta-G solvation = -2819.907268 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88459 -40.00876 -38.71040 -36.09755 -34.58533 -34.14721 -32.49327 -29.22774 -28.26458 -25.66221 -23.95123 -23.88870 -21.45343 -19.99946 -18.69652 -18.40895 -17.51869 -17.12493 -16.74209 -16.47556 -15.96459 -15.60736 -15.05515 -14.51224 -14.19067 -14.13763 -13.95918 -13.93676 -13.58276 -13.39211 -12.86054 -12.81585 -12.74253 -12.18715 -11.44277 -11.06643 -10.81183 -10.47267 -10.23924 -9.85087 -8.98753 -8.26982 -6.45252 -0.11624 0.44919 1.44873 1.47677 1.60681 1.92948 1.99712 2.32181 2.56594 2.85709 3.08264 3.40793 3.82196 3.95447 4.03441 4.34650 4.50243 4.75598 4.88956 4.95727 5.12893 5.22712 5.30307 5.44035 5.49893 5.70193 5.74296 5.84664 6.24132 6.65943 6.96619 7.16135 7.25036 7.56917 8.86275 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.048054 B = 0.005232 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.539230 B = 5350.043598 C = 5912.135822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.275 4.275 3 C 0.166 3.834 4 N -0.542 5.542 5 H 0.456 0.544 6 C 0.226 3.774 7 C -0.355 4.355 8 C 0.548 3.452 9 O -0.602 6.602 10 N -0.702 5.702 11 C 0.266 3.734 12 C -0.551 4.551 13 H 0.095 0.905 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.992 3.008 17 H -0.244 1.244 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.380 3.620 21 O -0.565 6.565 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.034 0.966 25 H 0.235 0.765 26 H 0.210 0.790 27 H 0.408 0.592 28 H -0.020 1.020 29 H -0.019 1.019 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 26.804 -0.019 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.281 4.281 3 C 0.040 3.960 4 N -0.147 5.147 5 H 0.299 0.701 6 C 0.089 3.911 7 C -0.366 4.366 8 C 0.337 3.663 9 O -0.484 6.484 10 N -0.354 5.354 11 C 0.143 3.857 12 C -0.588 4.588 13 H 0.113 0.887 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.815 3.185 17 H -0.167 1.167 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.272 3.728 21 O -0.453 6.453 22 H 0.087 0.913 23 H 0.126 0.874 24 H 0.054 0.946 25 H 0.251 0.749 26 H 0.227 0.773 27 H 0.245 0.755 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.116 25.347 -0.016 26.615 hybrid contribution 1.063 -0.731 0.012 1.290 sum -7.053 24.616 -0.005 25.607 Atomic orbital electron populations 1.20359 0.88124 1.03061 1.02502 1.21084 0.99264 0.92583 1.15140 1.22291 0.82504 1.00513 0.90704 1.40951 1.05931 1.09769 1.58084 0.70081 1.22550 0.98876 0.84290 0.85373 1.22175 0.96669 0.92904 1.24804 1.18450 0.82436 0.89123 0.76271 1.90761 1.72964 1.31920 1.52712 1.45950 1.04729 1.10775 1.73965 1.18549 0.90491 0.82983 0.93666 1.21646 0.89601 0.94868 1.52722 0.88747 1.26205 1.05753 0.94346 0.93807 1.70189 1.36276 1.00957 1.50096 0.85006 0.76420 0.79641 0.77441 1.16669 1.20727 1.20737 1.19054 0.87881 0.90371 0.75459 1.90752 1.72559 1.34974 1.47026 0.91329 0.87364 0.94636 0.74908 0.77342 0.75517 1.00159 1.00152 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.83 71.24 0.70 -0.89 16 2 C -0.28 -6.16 5.89 -19.79 -0.12 -6.27 16 3 C 0.17 1.26 10.73 83.34 0.89 2.15 16 4 N -0.54 -2.67 5.16 -194.21 -1.00 -3.67 16 5 H 0.46 -3.03 8.87 -92.71 -0.82 -3.86 16 6 C 0.23 3.64 10.74 84.25 0.90 4.54 16 7 C -0.35 -12.39 6.05 -18.63 -0.11 -12.50 16 8 C 0.55 26.78 7.77 86.62 0.67 27.46 16 9 O -0.60 -38.17 15.57 15.06 0.23 -37.94 16 10 N -0.70 -31.62 5.50 -470.25 -2.59 -34.21 16 11 C 0.27 15.52 5.43 85.63 0.46 15.99 16 12 C -0.55 -30.06 9.28 25.60 0.24 -29.82 16 13 H 0.09 4.42 7.60 -2.91 -0.02 4.40 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.94 -58.36 13.29 21.45 0.28 -58.07 16 16 Si 0.99 41.93 29.54 68.60 2.03 43.95 16 17 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 20 C 0.38 14.71 6.95 25.45 0.18 14.88 16 21 O -0.57 -29.79 15.63 13.53 0.21 -29.58 16 22 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.11 0.98 8.08 -2.39 -0.02 0.96 16 24 H 0.03 0.95 7.68 -2.39 -0.02 0.93 16 25 H 0.23 -1.24 8.06 -2.91 -0.02 -1.27 16 26 H 0.21 1.79 6.42 -2.91 -0.02 1.77 16 27 H 0.41 13.36 6.40 -92.70 -0.59 12.77 16 28 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 29 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -108.40 269.98 3.23 -105.18 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -0.23 Total: -1.54 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 4.28 Total: 15.87 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -3.30 Total: -95.95 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: 0.45 Total: -67.52 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -108.40 3.23 -105.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334078992.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.022 kcal (2) G-P(sol) polarization free energy of solvation -108.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds