Wall clock time and date at job start Mon Mar 30 2020 17:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21291 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00170 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99541 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00237 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00119 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99723 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47348 * 90.00104 * 15 13 11 17 17 H 1.48501 * 109.47297 * 209.99651 * 15 13 11 18 18 H 1.48501 * 109.47295 * 329.99884 * 15 13 11 19 19 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 20 20 C 1.31846 * 121.78127 * 359.97438 * 19 6 5 21 21 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 23 23 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 24 24 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 25 25 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 26 26 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 27 27 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 28 28 H 0.97000 * 120.00024 * 359.97438 * 10 8 7 29 29 H 0.97001 * 119.99778 * 180.02562 * 14 13 11 30 30 H 1.07995 * 119.65565 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9295 10 7 3.7192 7.0970 -1.3876 11 6 3.2310 7.8167 -2.4474 12 1 2.5086 7.3715 -3.1154 13 6 3.6655 9.1189 -2.6620 14 7 3.1980 9.8086 -3.6781 15 14 4.9155 9.8887 -1.5068 16 1 6.2866 9.6130 -2.0061 17 1 4.6964 11.3562 -1.4471 18 1 4.7574 9.3089 -0.1488 19 7 1.8944 3.5574 -0.0021 20 6 1.3002 2.3805 0.0031 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 4.0433 0.4030 0.0014 25 1 5.0932 2.6552 -0.0098 26 1 3.5942 5.5572 0.9160 27 1 4.9161 4.9472 -0.1081 28 1 4.3682 7.4967 -0.7877 29 1 3.5017 10.7176 -3.8281 30 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339510936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:32 Heat of formation + Delta-G solvation = -32.481655 kcal Electronic energy + Delta-G solvation = -15849.025411 eV Core-core repulsion = 13031.185505 eV Total energy + Delta-G solvation = -2817.839906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55510 -38.61473 -37.65215 -33.93418 -32.26489 -32.04202 -31.48856 -28.18355 -27.16575 -24.55534 -23.21360 -21.93804 -19.31510 -18.34377 -18.07679 -16.98606 -15.96941 -15.77724 -15.58336 -14.79808 -14.51288 -14.16159 -13.87037 -13.38747 -13.16022 -12.86034 -12.50567 -12.16364 -12.01404 -11.77190 -11.65441 -11.31920 -11.07121 -10.54757 -9.92146 -9.58213 -9.50220 -9.13143 -8.50093 -8.16127 -8.10862 -6.24970 -3.75983 1.26525 1.46466 3.07549 3.10932 3.13487 3.19144 3.82500 3.94054 4.15657 4.55817 4.67572 4.73520 4.88958 5.01189 5.03112 5.17962 5.29269 5.31891 5.46938 5.62813 5.78550 5.88675 5.94867 6.17204 6.25182 6.61926 7.20337 7.63590 8.20436 8.29219 8.66595 9.01857 9.49191 9.90987 10.88514 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.055643 B = 0.005042 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.086701 B = 5551.933496 C = 5867.265519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.061 3.939 4 C -0.110 4.110 5 C -0.131 4.131 6 C 0.125 3.875 7 C -0.087 4.087 8 C 0.460 3.540 9 O -0.559 6.559 10 N -0.594 5.594 11 C -0.302 4.302 12 H 0.118 0.882 13 C 0.040 3.960 14 N -0.885 5.885 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.269 1.269 19 N -0.414 5.414 20 C 0.026 3.974 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.370 0.630 29 H 0.272 0.728 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -15.336 11.096 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.014 3.986 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.014 4.014 7 C -0.128 4.128 8 C 0.245 3.755 9 O -0.441 6.441 10 N -0.233 5.233 11 C -0.431 4.431 12 H 0.136 0.864 13 C -0.162 4.162 14 N -0.525 5.525 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.203 1.203 18 H -0.194 1.194 19 N -0.123 5.123 20 C -0.133 4.133 21 H 0.118 0.882 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.319 -14.924 10.448 18.221 hybrid contribution 1.205 0.168 0.730 1.419 sum 1.524 -14.756 11.179 18.575 Atomic orbital electron populations 1.23080 0.78280 1.03928 1.01745 1.86025 1.21458 1.26392 1.89034 1.20068 0.93302 0.85603 0.99659 1.20786 0.91569 0.98532 1.02784 1.21804 1.01210 0.91687 1.00424 1.20594 0.89073 0.94639 0.97076 1.20516 1.00213 0.91813 1.00253 1.19482 0.85792 0.82680 0.87573 1.90586 1.35323 1.69803 1.48346 1.42191 1.40799 1.12620 1.27738 1.19431 1.23995 0.95361 1.04317 0.86408 1.25027 0.98086 0.96179 0.96957 1.69626 1.43398 1.11043 1.28445 0.86669 0.81993 0.79883 0.80840 1.19678 1.20273 1.19408 1.67356 1.11686 1.25823 1.07400 1.22897 1.00396 0.87048 1.02928 0.88220 0.92521 0.92306 0.84344 0.84182 0.88426 0.88668 0.79683 0.91715 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.89 10.51 -19.46 -0.20 -4.10 16 3 C 0.06 0.86 6.71 -39.08 -0.26 0.60 16 4 C -0.11 -1.45 10.13 -39.13 -0.40 -1.85 16 5 C -0.13 -1.82 9.70 -39.46 -0.38 -2.20 16 6 C 0.13 2.17 5.76 -82.58 -0.48 1.69 16 7 C -0.09 -1.48 6.10 -29.03 -0.18 -1.65 16 8 C 0.46 10.81 7.71 -10.98 -0.08 10.73 16 9 O -0.56 -15.70 14.91 5.55 0.08 -15.61 16 10 N -0.59 -14.47 5.09 -10.96 -0.06 -14.52 16 11 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 12 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -26.30 13.96 55.50 0.77 -25.53 16 15 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 19 N -0.41 -7.90 9.21 -9.35 -0.09 -7.98 16 20 C 0.03 0.42 10.22 -17.37 -0.18 0.24 16 21 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 23 H 0.06 0.50 7.69 -51.93 -0.40 0.10 16 24 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 25 H 0.14 1.47 7.95 -52.49 -0.42 1.05 16 26 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 28 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 30 H 0.15 2.02 6.32 -52.49 -0.33 1.69 16 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -35.76 267.25 -4.40 -40.16 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.01 Total: 7.80 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.21 Total: 0.87 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.63 Total: -48.03 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.12 Total: -19.71 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.76 -4.40 -40.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339510936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.681 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds