Wall clock time and date at job start Mon Mar 30 2020 17:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21291 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00170 * 179.97438 * 10 8 7 12 12 H 1.07998 * 119.99541 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00237 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00119 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99723 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47348 * 90.00104 * 15 13 11 17 17 H 1.48501 * 109.47297 * 209.99651 * 15 13 11 18 18 H 1.48501 * 109.47295 * 329.99884 * 15 13 11 19 19 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 20 20 C 1.31846 * 121.78127 * 359.97438 * 19 6 5 21 21 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 23 23 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 24 24 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 25 25 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 26 26 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 27 27 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 28 28 H 0.97000 * 120.00024 * 359.97438 * 10 8 7 29 29 H 0.97001 * 119.99778 * 180.02562 * 14 13 11 30 30 H 1.07995 * 119.65565 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9295 10 7 3.7192 7.0970 -1.3876 11 6 3.2310 7.8167 -2.4474 12 1 2.5086 7.3715 -3.1154 13 6 3.6655 9.1189 -2.6620 14 7 3.1980 9.8086 -3.6781 15 14 4.9155 9.8887 -1.5068 16 1 6.2866 9.6130 -2.0061 17 1 4.6964 11.3562 -1.4471 18 1 4.7574 9.3089 -0.1488 19 7 1.8944 3.5574 -0.0021 20 6 1.3002 2.3805 0.0031 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 4.0433 0.4030 0.0014 25 1 5.0932 2.6552 -0.0098 26 1 3.5942 5.5572 0.9160 27 1 4.9161 4.9472 -0.1081 28 1 4.3682 7.4967 -0.7877 29 1 3.5017 10.7176 -3.8281 30 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339510936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:32 Heat of formation + Delta-G solvation = -60.797615 kcal Electronic energy + Delta-G solvation = -15850.253283 eV Core-core repulsion = 13031.185505 eV Total energy + Delta-G solvation = -2819.067778 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65773 -40.19294 -38.95156 -35.97781 -33.79790 -33.34411 -33.14779 -29.33859 -28.20530 -26.44409 -24.31531 -23.17019 -21.23843 -20.25542 -19.08347 -18.14706 -17.53235 -17.02847 -16.76466 -16.54823 -15.87998 -15.41697 -15.02619 -14.96317 -14.70010 -14.36761 -13.95953 -13.79124 -13.17000 -13.00530 -12.77769 -12.73017 -12.38679 -12.27204 -11.95654 -11.47333 -10.67159 -10.44518 -10.22190 -10.21008 -9.30068 -8.38769 -5.99570 0.16224 0.37884 1.33057 1.38736 1.47672 2.02407 2.25641 2.26289 2.70272 3.11787 3.20740 3.42994 3.70296 3.80363 4.05184 4.28734 4.35730 4.40526 4.46772 4.58613 4.66432 4.70710 4.77460 5.00910 5.15886 5.53722 5.60627 5.97314 6.23489 6.62060 6.91490 7.14432 7.43273 8.02345 8.79440 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.055643 B = 0.005042 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.086701 B = 5551.933496 C = 5867.265519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.064 3.936 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.088 3.912 7 C -0.074 4.074 8 C 0.456 3.544 9 O -0.614 6.614 10 N -0.593 5.593 11 C -0.328 4.328 12 H 0.050 0.950 13 C -0.017 4.017 14 N -0.939 5.939 15 Si 0.968 3.032 16 H -0.254 1.254 17 H -0.277 1.277 18 H -0.229 1.229 19 N -0.464 5.464 20 C 0.003 3.997 21 H 0.129 0.871 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.171 0.829 25 H 0.180 0.820 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.391 0.609 29 H 0.278 0.722 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -16.387 13.730 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.017 3.983 4 C -0.139 4.139 5 C -0.138 4.138 6 C -0.051 4.051 7 C -0.114 4.114 8 C 0.244 3.756 9 O -0.498 6.498 10 N -0.235 5.235 11 C -0.457 4.457 12 H 0.068 0.932 13 C -0.215 4.215 14 N -0.580 5.580 15 Si 0.787 3.213 16 H -0.178 1.178 17 H -0.202 1.202 18 H -0.153 1.153 19 N -0.173 5.173 20 C -0.155 4.155 21 H 0.147 0.853 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.188 0.812 25 H 0.198 0.802 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.227 0.773 29 H 0.088 0.912 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.978 -16.006 13.107 20.901 hybrid contribution 0.219 0.340 -0.176 0.441 sum 3.197 -15.666 12.931 20.563 Atomic orbital electron populations 1.23381 0.76434 1.05982 1.02083 1.86027 1.23388 1.25382 1.88585 1.20214 0.94036 0.85658 0.98421 1.21247 0.91449 0.99631 1.01589 1.22164 1.02836 0.90638 0.98186 1.20864 0.89146 0.95800 0.99299 1.20551 1.02536 0.90852 0.97462 1.20810 0.84195 0.82305 0.88311 1.90561 1.37542 1.70933 1.50768 1.42012 1.41459 1.12946 1.27068 1.18992 1.24338 0.96702 1.05699 0.93200 1.26153 1.00444 0.95942 0.98994 1.69818 1.45372 1.11782 1.30992 0.85329 0.78274 0.78259 0.79423 1.17808 1.20202 1.15264 1.67244 1.13328 1.27718 1.09037 1.23091 1.01210 0.87178 1.04070 0.85311 0.91566 0.92647 0.81153 0.80232 0.86085 0.83909 0.77287 0.91209 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.35 16 2 O -0.32 -7.34 10.51 -92.55 -0.97 -8.31 16 3 C 0.06 1.73 6.71 22.60 0.15 1.88 16 4 C -0.11 -2.65 10.13 22.56 0.23 -2.43 16 5 C -0.12 -2.91 9.70 22.35 0.22 -2.69 16 6 C 0.09 2.91 5.76 42.56 0.25 3.15 16 7 C -0.07 -2.31 6.10 29.10 0.18 -2.14 16 8 C 0.46 21.50 7.71 87.66 0.68 22.17 16 9 O -0.61 -36.01 14.91 -3.06 -0.05 -36.05 16 10 N -0.59 -28.71 5.09 -306.98 -1.56 -30.27 16 11 C -0.33 -19.79 10.16 84.04 0.85 -18.94 16 12 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 13 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 14 N -0.94 -57.83 13.96 21.66 0.30 -57.52 16 15 Si 0.97 39.21 27.74 68.60 1.90 41.12 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 17 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 19 N -0.46 -17.84 9.21 -183.49 -1.69 -19.53 16 20 C 0.00 0.09 10.22 84.80 0.87 0.96 16 21 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 23 H 0.05 0.91 7.69 -2.39 -0.02 0.89 16 24 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 25 H 0.18 2.81 7.95 -2.91 -0.02 2.79 16 26 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.14 3.07 7.87 -2.39 -0.02 3.06 16 28 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 29 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.16 4.43 6.32 -2.91 -0.02 4.41 16 Total: -1.00 -85.25 267.25 3.51 -81.74 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.58 Total: 26.02 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.00 Total: 2.82 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -2.95 Total: -107.33 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.02 Total: -44.37 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.12 kcal Total: -85.25 3.51 -81.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339510936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.940 kcal (2) G-P(sol) polarization free energy of solvation -85.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds