Wall clock time and date at job start Mon Mar 30 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.35731 * 116.99812 * 2 1 4 4 C 1.39285 * 120.85125 * 0.02562 * 3 2 1 5 5 C 1.37948 * 119.09482 * 179.97438 * 4 3 2 6 6 N 1.31972 * 120.82650 * 0.02562 * 5 4 3 7 7 C 1.31953 * 121.85976 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.58495 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47294 * 304.99547 * 8 7 6 10 10 O 1.21295 * 119.99584 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99943 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00099 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00243 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47026 * 90.00208 * 16 14 12 18 18 H 1.48496 * 109.47474 * 210.00244 * 16 14 12 19 19 H 1.48504 * 109.47117 * 330.00775 * 16 14 12 20 20 C 1.37992 * 120.82216 * 0.27393 * 7 6 5 21 21 H 1.08997 * 109.47203 * 300.00274 * 1 2 3 22 22 H 1.09000 * 109.46577 * 59.99712 * 1 2 3 23 23 H 1.09002 * 109.46882 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.45166 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.58870 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.46665 * 184.99928 * 8 7 6 27 27 H 1.09000 * 109.47722 * 65.00260 * 8 7 6 28 28 H 0.96994 * 119.99756 * 0.02562 * 11 9 8 29 29 H 0.96999 * 120.00288 * 179.97438 * 15 14 12 30 30 H 1.08003 * 120.45379 * 179.70537 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 0.0005 5 6 1.9677 3.5980 0.0011 6 7 3.2866 3.6457 0.0005 7 6 4.0231 2.5509 0.0000 8 6 5.5258 2.6651 0.0000 9 6 5.9649 3.5163 -1.1635 10 8 5.1388 3.9845 -1.9183 11 7 7.2755 3.7572 -1.3655 12 6 7.6749 4.5319 -2.4237 13 1 6.9393 4.9495 -3.0953 14 6 9.0260 4.7807 -2.6316 15 7 9.9211 4.2731 -1.8142 16 14 9.5704 5.8357 -4.0739 17 1 9.6277 7.2585 -3.6525 18 1 10.9154 5.3990 -4.5269 19 1 8.6005 5.6885 -5.1888 20 6 3.4346 1.3028 -0.0057 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2245 2.3566 0.0014 25 1 1.4008 4.5174 0.0019 26 1 5.9656 1.6719 -0.0900 27 1 5.8553 3.1253 0.9316 28 1 7.9360 3.3824 -0.7621 29 1 10.8643 4.4465 -1.9596 30 1 4.0432 0.4106 -0.0109 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346298429.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:38 Heat of formation + Delta-G solvation = -65.569518 kcal Electronic energy + Delta-G solvation = -15807.989448 eV Core-core repulsion = 12988.714744 eV Total energy + Delta-G solvation = -2819.274703 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63014 -40.08333 -39.01922 -35.94913 -33.78766 -33.13019 -32.42316 -29.71563 -28.15144 -26.54827 -24.42441 -23.06675 -21.06185 -19.93451 -18.80956 -18.10935 -17.53898 -16.77741 -16.67068 -16.45325 -16.05610 -15.78019 -15.33794 -14.87398 -14.69612 -14.34304 -13.85956 -13.48739 -13.13759 -12.99151 -12.77186 -12.41027 -12.39624 -12.14859 -12.08594 -11.47954 -10.46723 -10.28145 -9.98800 -9.93118 -9.80995 -8.43910 -5.92290 0.13003 0.44065 1.39336 1.42232 1.55301 2.09792 2.16695 2.32552 2.80883 3.22574 3.37375 3.40981 3.72466 3.97353 4.17255 4.24979 4.37804 4.38960 4.46686 4.56970 4.68448 4.73464 4.84627 4.96137 5.09212 5.43330 5.57612 6.02481 6.26120 6.63227 7.15481 7.22649 7.59153 8.16101 8.73778 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.004734 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.687010 B = 5913.114089 C = 6050.449575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.159 3.841 4 C -0.259 4.259 5 C 0.122 3.878 6 N -0.519 5.519 7 C 0.169 3.831 8 C -0.078 4.078 9 C 0.449 3.551 10 O -0.620 6.620 11 N -0.574 5.574 12 C -0.333 4.333 13 H 0.076 0.924 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.992 3.008 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.274 1.274 20 C -0.211 4.211 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.124 0.876 24 H 0.172 0.828 25 H 0.177 0.823 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.398 0.602 29 H 0.278 0.722 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.220 -8.366 6.622 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.279 4.279 5 C -0.035 4.035 6 N -0.232 5.232 7 C 0.033 3.967 8 C -0.119 4.119 9 C 0.236 3.764 10 O -0.506 6.506 11 N -0.212 5.212 12 C -0.462 4.462 13 H 0.094 0.906 14 C -0.212 4.212 15 N -0.562 5.562 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.199 1.199 20 C -0.232 4.232 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.143 0.857 24 H 0.189 0.811 25 H 0.194 0.806 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.232 0.768 29 H 0.087 0.913 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.081 -7.481 6.124 17.914 hybrid contribution 0.169 -0.232 -0.424 0.512 sum -14.912 -7.713 5.700 17.730 Atomic orbital electron populations 1.23464 0.75683 1.06068 1.02696 1.86040 1.24128 1.25649 1.87885 1.19323 0.92163 0.85441 0.92575 1.22449 1.02808 0.92201 1.10491 1.23017 0.89488 0.98671 0.92335 1.67479 1.08324 1.33052 1.14296 1.20571 0.95463 0.88066 0.92619 1.20524 0.90534 1.02417 0.98399 1.20524 0.82412 0.85153 0.88333 1.90511 1.52904 1.56562 1.50580 1.41893 1.06014 1.46157 1.27124 1.19645 0.92321 1.27871 1.06411 0.90639 1.26011 0.94968 0.99011 1.01216 1.69670 1.02288 1.45548 1.38674 0.84942 0.77658 0.78165 0.77635 1.19689 1.19345 1.19933 1.21393 0.93202 0.99172 1.09421 0.90952 0.91657 0.85750 0.81093 0.80649 0.85435 0.86357 0.76817 0.91305 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.84 113.37 1.12 1.30 16 2 O -0.33 -7.39 10.51 -90.54 -0.95 -8.34 16 3 C 0.16 4.31 6.74 22.76 0.15 4.47 16 4 C -0.26 -6.33 9.11 22.45 0.20 -6.13 16 5 C 0.12 3.69 11.17 84.60 0.95 4.63 16 6 N -0.52 -20.40 9.22 -184.12 -1.70 -22.09 16 7 C 0.17 6.25 5.76 42.48 0.24 6.49 16 8 C -0.08 -2.88 6.10 29.10 0.18 -2.70 16 9 C 0.45 22.58 7.71 87.66 0.68 23.26 16 10 O -0.62 -36.48 14.91 -3.08 -0.05 -36.52 16 11 N -0.57 -30.61 5.29 -306.98 -1.62 -32.23 16 12 C -0.33 -19.57 9.68 84.04 0.81 -18.75 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 15 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 16 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.21 -6.52 9.67 22.45 0.22 -6.30 16 21 H 0.07 0.69 7.71 -2.39 -0.02 0.67 16 22 H 0.06 0.73 7.71 -2.39 -0.02 0.71 16 23 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.17 2.71 6.47 -2.91 -0.02 2.69 16 25 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 26 H 0.13 3.77 7.87 -2.39 -0.02 3.75 16 27 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 28 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 29 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.16 4.07 7.95 -2.91 -0.02 4.05 16 Total: -1.00 -75.80 270.54 3.44 -72.36 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.44 Total: 25.10 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.01 Total: 6.04 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.04 Total: -104.71 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.00 Total: -44.86 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.80 3.44 -72.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346298429.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.789 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds