Wall clock time and date at job start Mon Mar 30 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46504 * 109.47110 * 260.00736 * 9 8 7 11 11 C 1.34781 * 119.99591 * 179.97438 * 10 9 8 12 12 O 1.21684 * 120.00148 * 359.97438 * 11 10 9 13 13 C 1.46373 * 119.99430 * 179.97438 * 11 10 9 14 14 H 1.08003 * 120.00531 * 359.97438 * 13 11 10 15 15 C 1.40047 * 119.99695 * 180.02562 * 13 11 10 16 16 N 1.30666 * 120.00098 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 119.99823 * 180.02562 * 15 13 11 18 18 H 1.48489 * 109.47157 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47015 * 120.00223 * 17 15 13 20 20 H 1.48507 * 109.46908 * 239.99819 * 17 15 13 21 21 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 22 22 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 23 23 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 25 25 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 26 26 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 27 27 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 28 28 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 29 29 H 0.97001 * 120.00318 * 359.97438 * 10 9 8 30 30 H 0.97009 * 120.00235 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3605 -0.4796 -1.3617 11 6 5.0723 -1.5979 -1.6052 12 8 5.6516 -2.1607 -0.6950 13 6 5.1484 -2.1354 -2.9645 14 1 4.6339 -1.6362 -3.7723 15 6 5.8875 -3.2977 -3.2175 16 7 6.5096 -3.9021 -2.2402 17 14 5.9853 -3.9833 -4.9525 18 1 5.1998 -3.1203 -5.8707 19 1 7.4031 -4.0145 -5.3932 20 1 5.4303 -5.3606 -4.9724 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2244 2.3567 0.0003 25 1 1.4006 4.5174 0.0011 26 1 5.0999 2.6329 0.0011 27 1 5.2864 0.3019 0.3502 28 1 3.8385 -0.6862 0.6592 29 1 3.8990 -0.0308 -2.0873 30 1 7.0219 -4.7070 -2.4155 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348299101.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:41 Heat of formation + Delta-G solvation = -42.266806 kcal Electronic energy + Delta-G solvation = -16098.185854 eV Core-core repulsion = 13279.921632 eV Total energy + Delta-G solvation = -2818.264222 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64047 -38.15009 -37.17107 -33.96036 -32.37961 -31.19986 -30.87279 -27.66532 -26.87358 -25.04003 -22.85518 -21.86872 -19.62174 -18.33343 -17.27624 -17.02969 -15.87642 -15.38632 -15.04418 -14.91287 -14.33279 -14.14007 -13.98104 -13.39962 -13.20641 -12.83339 -12.27335 -12.00667 -11.62470 -11.39899 -11.14489 -11.01194 -10.85434 -10.43250 -10.17237 -9.46748 -9.15965 -8.82825 -8.75495 -7.54222 -7.43886 -6.14752 -4.59795 1.10450 1.38702 3.15081 3.15648 3.23105 3.27796 3.81326 4.15159 4.46246 4.62971 4.65003 4.82115 4.98619 5.04009 5.07552 5.24709 5.38662 5.43587 5.63854 5.75607 5.88033 5.98853 6.40654 6.56600 6.66760 7.23021 7.47125 7.96659 8.04521 8.13219 8.37621 9.06380 9.58468 10.64095 10.82960 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.005885 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.624669 B = 4756.497441 C = 5000.092682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.180 3.820 4 C -0.268 4.268 5 C 0.128 3.872 6 N -0.512 5.512 7 C 0.144 3.856 8 C -0.172 4.172 9 C 0.184 3.816 10 N -0.759 5.759 11 C 0.556 3.444 12 O -0.581 6.581 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.136 0.864 25 H 0.154 0.846 26 H 0.164 0.836 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.379 0.621 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 10.731 2.620 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.125 3.875 4 C -0.289 4.289 5 C -0.029 4.029 6 N -0.224 5.224 7 C -0.012 4.012 8 C -0.175 4.175 9 C 0.059 3.941 10 N -0.415 5.415 11 C 0.360 3.640 12 O -0.464 6.464 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.171 0.829 26 H 0.181 0.819 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.210 0.790 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.807 10.712 3.385 15.589 hybrid contribution -1.019 -0.799 -1.197 1.763 sum -11.826 9.914 2.188 15.586 Atomic orbital electron populations 1.23133 0.78277 1.04418 1.01144 1.86251 1.21324 1.25776 1.87049 1.19276 0.92052 0.84702 0.91434 1.22176 1.01304 0.93256 1.12139 1.22494 0.90437 0.96746 0.93195 1.67743 1.06997 1.32139 1.15495 1.22663 1.00422 0.86035 0.92042 1.20715 0.91425 0.98224 1.07149 1.19532 0.96569 0.89749 0.88242 1.46144 1.57777 1.30960 1.06580 1.18222 0.77666 0.77965 0.90119 1.90596 1.48763 1.60176 1.46838 1.20905 1.33494 1.10783 0.92906 0.91487 1.25700 0.93591 0.95979 0.97905 1.70034 1.22953 1.14939 1.31837 0.86335 0.78473 0.79070 0.82968 1.18837 1.20149 1.20199 0.92685 0.92479 0.87848 0.84601 0.82854 0.81926 0.92222 0.92092 0.79013 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.84 101.05 0.99 1.25 16 2 O -0.29 -4.50 9.86 -18.94 -0.19 -4.69 16 3 C 0.18 2.69 6.70 -38.82 -0.26 2.43 16 4 C -0.27 -3.18 9.11 -39.30 -0.36 -3.54 16 5 C 0.13 1.53 11.17 -17.60 -0.20 1.34 16 6 N -0.51 -7.33 10.36 -13.33 -0.14 -7.47 16 7 C 0.14 2.15 10.82 -17.59 -0.19 1.96 16 8 C -0.17 -2.81 5.28 -104.34 -0.55 -3.36 16 9 C 0.18 3.72 5.53 -5.19 -0.03 3.70 16 10 N -0.76 -17.68 5.54 -62.90 -0.35 -18.03 16 11 C 0.56 16.20 7.75 -12.99 -0.10 16.10 16 12 O -0.58 -19.16 15.02 5.20 0.08 -19.08 16 13 C -0.54 -15.67 9.54 -35.63 -0.34 -16.01 16 14 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 15 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 16 N -0.77 -23.38 11.83 55.55 0.66 -22.72 16 17 Si 0.91 20.40 29.56 -169.99 -5.02 15.38 16 18 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H 0.05 0.44 7.71 -51.92 -0.40 0.04 16 22 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 23 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.14 1.20 6.47 -52.49 -0.34 0.86 16 25 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 26 H 0.16 2.18 8.04 -52.49 -0.42 1.76 16 27 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 28 H 0.06 1.33 7.92 -51.93 -0.41 0.92 16 29 H 0.38 8.07 8.44 -40.82 -0.34 7.72 16 30 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -35.96 271.39 -5.13 -41.08 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.13 Total: 5.20 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.13 Total: 6.24 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.17 Total: -48.22 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.11 Total: -23.77 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.96 -5.13 -41.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348299101.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.183 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds