Wall clock time and date at job start Mon Mar 30 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38363 * 120.82728 * 2 1 4 4 C 1.38320 * 119.46802 * 179.70418 * 3 2 1 5 5 N 1.31935 * 121.19530 * 0.58864 * 4 3 2 6 6 C 1.32184 * 121.80447 * 359.70955 * 5 4 3 7 7 O 1.35434 * 119.80146 * 180.02562 * 6 5 4 8 8 C 1.40006 * 120.82779 * 180.28030 * 2 1 3 9 9 C 1.47419 * 120.60514 * 0.02562 * 8 2 1 10 10 O 1.21623 * 120.00254 * 89.99639 * 9 8 2 11 11 N 1.34777 * 119.99901 * 270.00563 * 9 8 2 12 12 C 1.46501 * 120.00167 * 359.97438 * 11 9 8 13 13 C 1.36907 * 119.99988 * 179.97438 * 11 9 8 14 14 H 1.08001 * 119.99913 * 22.48846 * 13 11 9 15 15 C 1.39024 * 120.00105 * 202.48530 * 13 11 9 16 16 N 1.31384 * 119.99950 * 11.52942 * 15 13 11 17 17 Si 1.86798 * 120.00172 * 191.52299 * 15 13 11 18 18 H 1.48501 * 109.46879 * 60.00289 * 17 15 13 19 19 H 1.48499 * 109.46882 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47176 * 300.00637 * 17 15 13 21 21 H 1.09001 * 109.47227 * 269.72085 * 1 2 3 22 22 H 1.08997 * 109.47187 * 149.72100 * 1 2 3 23 23 H 1.09000 * 109.47226 * 29.72292 * 1 2 3 24 24 H 1.08001 * 120.26840 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.40624 * 180.29648 * 4 3 2 26 26 H 0.96700 * 113.99966 * 269.97213 * 7 6 5 27 27 H 1.08993 * 109.46983 * 92.26657 * 12 11 9 28 28 H 1.08998 * 109.47221 * 212.26813 * 12 11 9 29 29 H 1.09002 * 109.47236 * 332.26713 * 12 11 9 30 30 H 0.96996 * 119.99963 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1881 0.0000 4 6 3.5989 1.1553 0.0062 5 7 4.2553 0.0109 0.0006 6 6 3.6275 -1.1523 -0.0055 7 8 4.3420 -2.3028 -0.0107 8 6 2.2245 -1.2022 -0.0059 9 6 1.5196 -2.4969 -0.0128 10 8 1.2291 -3.0256 -1.0689 11 7 1.1968 -3.0947 1.1513 12 6 1.5470 -2.4581 2.4234 13 6 0.5417 -4.2968 1.1449 14 1 0.5976 -4.9377 0.2774 15 6 -0.1956 -4.6926 2.2551 16 7 -0.4538 -3.8315 3.2132 17 14 -0.8193 -6.4486 2.3845 18 1 0.3326 -7.3856 2.3663 19 1 -1.5725 -6.6140 3.6536 20 1 -1.7142 -6.7420 1.2364 21 1 -0.3634 -0.0050 1.0277 22 1 -0.3633 -0.8874 -0.5181 23 1 -0.3634 0.8924 -0.5095 24 1 1.6941 2.1336 -0.0004 25 1 4.1513 2.0833 0.0111 26 1 4.5497 -2.6329 -0.8956 27 1 0.7153 -1.8399 2.7613 28 1 1.7553 -3.2257 3.1686 29 1 2.4308 -1.8350 2.2868 30 1 -0.9678 -4.1077 3.9880 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354404294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:45 Heat of formation + Delta-G solvation = -30.431878 kcal Electronic energy + Delta-G solvation = -16935.559285 eV Core-core repulsion = 14117.808264 eV Total energy + Delta-G solvation = -2817.751021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37395 -37.99462 -36.82821 -34.70694 -33.46169 -31.64368 -30.02760 -27.73083 -26.32616 -24.91532 -23.25622 -21.88092 -19.52834 -18.07272 -17.00376 -16.78658 -16.37611 -15.41380 -15.10092 -14.46148 -14.08322 -13.69281 -13.39652 -13.00367 -12.56581 -12.43318 -12.30801 -11.68383 -11.49058 -11.41017 -11.34959 -11.22802 -10.88774 -10.43850 -10.34924 -9.43061 -9.20815 -9.06236 -8.64512 -8.35578 -7.74900 -6.37387 -3.93296 1.20063 1.43204 3.15311 3.22103 3.26165 3.67781 3.75144 4.00479 4.14512 4.76463 4.92496 4.97033 5.06115 5.34256 5.46863 5.60159 5.75170 5.93209 5.96571 6.15818 6.36367 6.37815 6.55115 6.77798 6.88789 7.19285 7.50902 7.79951 8.04617 8.14611 8.41459 9.10033 9.34556 9.89900 10.65742 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.036175 B = 0.008129 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.830149 B = 3443.512948 C = 3666.149325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.002 4.002 3 C -0.189 4.189 4 C 0.119 3.881 5 N -0.512 5.512 6 C 0.331 3.669 7 O -0.474 6.474 8 C -0.149 4.149 9 C 0.490 3.510 10 O -0.587 6.587 11 N -0.423 5.423 12 C 0.116 3.884 13 C -0.308 4.308 14 H 0.100 0.900 15 C 0.033 3.967 16 N -0.878 5.878 17 Si 0.930 3.070 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.138 0.862 25 H 0.157 0.843 26 H 0.401 0.599 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 8.701 -2.143 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.010 4.010 3 C -0.209 4.209 4 C -0.038 4.038 5 N -0.231 5.231 6 C 0.152 3.848 7 O -0.281 6.281 8 C -0.155 4.155 9 C 0.277 3.723 10 O -0.474 6.474 11 N -0.139 5.139 12 C -0.028 4.028 13 C -0.436 4.436 14 H 0.118 0.882 15 C -0.171 4.171 16 N -0.517 5.517 17 Si 0.756 3.244 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.197 1.197 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.155 0.845 25 H 0.175 0.825 26 H 0.259 0.741 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.139 8.383 -1.814 9.523 hybrid contribution -1.068 -0.781 -0.113 1.328 sum 3.071 7.601 -1.927 8.422 Atomic orbital electron populations 1.20875 0.89626 1.03576 1.03564 1.20363 0.97112 0.91099 0.92454 1.21903 0.95427 0.98423 1.05182 1.22447 0.91459 0.94887 0.95039 1.67122 1.42214 0.98293 1.15477 1.19195 0.85969 0.85199 0.94408 1.84696 1.74420 1.35205 1.33729 1.21319 0.93821 0.96564 1.03825 1.17423 0.85553 0.84358 0.85001 1.90634 1.60175 1.65834 1.30720 1.43453 1.47982 1.18603 1.03834 1.21470 0.96994 0.97553 0.86740 1.19636 1.26943 0.93871 1.03135 0.88184 1.25390 0.95908 0.99832 0.95980 1.69984 1.37927 1.33997 1.09783 0.85944 0.78945 0.81880 0.77635 1.19774 1.20862 1.19684 0.89866 0.90025 0.91134 0.84453 0.82531 0.74143 0.92358 0.91103 0.95841 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.69 36.01 0.35 -1.62 16 2 C 0.00 -0.04 5.95 -103.91 -0.62 -0.65 16 3 C -0.19 -2.63 9.79 -39.51 -0.39 -3.02 16 4 C 0.12 1.67 11.17 -17.48 -0.20 1.47 16 5 N -0.51 -8.96 10.37 -12.96 -0.13 -9.10 16 6 C 0.33 6.49 7.35 -16.59 -0.12 6.37 16 7 O -0.47 -9.02 13.02 -17.99 -0.23 -9.25 16 8 C -0.15 -3.10 3.90 -104.69 -0.41 -3.51 16 9 C 0.49 12.34 5.23 -12.52 -0.07 12.27 16 10 O -0.59 -16.57 16.80 5.26 0.09 -16.48 16 11 N -0.42 -11.11 3.01 -123.43 -0.37 -11.48 16 12 C 0.12 2.77 8.54 59.85 0.51 3.29 16 13 C -0.31 -8.61 9.28 -14.99 -0.14 -8.75 16 14 H 0.10 2.90 7.40 -52.49 -0.39 2.52 16 15 C 0.03 0.86 5.11 -17.45 -0.09 0.77 16 16 N -0.88 -23.17 10.61 55.50 0.59 -22.58 16 17 Si 0.93 20.62 29.57 -169.99 -5.03 15.60 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 22 H 0.08 1.60 7.19 -51.93 -0.37 1.22 16 23 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 24 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 26 H 0.40 5.84 9.06 45.56 0.41 6.25 16 27 H 0.06 1.40 7.53 -51.93 -0.39 1.01 16 28 H 0.07 1.76 7.07 -51.93 -0.37 1.39 16 29 H 0.02 0.52 6.47 -51.93 -0.34 0.18 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -32.62 266.11 -4.51 -37.13 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -2.27 Total: 5.54 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.17 Total: 6.62 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.08 Total: -43.16 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.15 Total: -25.74 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.62 -4.51 -37.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354404294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.697 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds