Wall clock time and date at job start Mon Mar 30 2020 17:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47410 * 2 1 4 4 N 1.46507 * 109.46841 * 120.00250 * 2 1 3 5 5 C 1.34772 * 119.99664 * 274.99370 * 4 2 1 6 6 O 1.21694 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.46374 * 120.00069 * 179.97438 * 5 4 2 8 8 H 1.08000 * 120.00082 * 0.02562 * 7 5 4 9 9 C 1.40044 * 120.00348 * 180.02562 * 7 5 4 10 10 N 1.30672 * 119.99914 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00269 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47086 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47232 * 119.99553 * 11 9 7 14 14 H 1.48496 * 109.47186 * 240.00028 * 11 9 7 15 15 C 1.50696 * 109.47069 * 239.99751 * 2 1 3 16 16 C 1.38835 * 120.76097 * 280.00686 * 15 2 1 17 17 C 1.38040 * 119.29432 * 179.72621 * 16 15 2 18 18 N 1.31976 * 120.83318 * 359.97438 * 17 16 15 19 19 C 1.32242 * 121.64483 * 0.02562 * 18 17 16 20 20 O 1.35682 * 119.68106 * 180.02562 * 19 18 17 21 21 C 1.38380 * 120.75939 * 99.72258 * 15 2 1 22 22 H 1.09008 * 109.47323 * 300.00349 * 1 2 3 23 23 H 1.09005 * 109.47396 * 59.99704 * 1 2 3 24 24 H 1.09002 * 109.47866 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00222 * 94.99987 * 4 2 1 26 26 H 0.96997 * 120.00188 * 180.02562 * 10 9 7 27 27 H 1.07998 * 120.35161 * 359.69934 * 16 15 2 28 28 H 1.08000 * 119.58580 * 179.97438 * 17 16 15 29 29 H 0.96694 * 114.00337 * 89.99977 * 20 19 18 30 30 H 1.08004 * 120.44246 * 0.25116 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8573 1.1624 2.4118 7 6 2.6343 -0.7085 3.5524 8 1 2.8911 -1.7564 3.5040 9 6 2.7677 -0.0100 4.7589 10 7 2.4575 1.2581 4.8174 11 14 3.3902 -0.8905 6.2842 12 1 3.6701 -2.3115 5.9558 13 1 4.6363 -0.2371 6.7591 14 1 2.3587 -0.8234 7.3502 15 6 2.0323 -0.7104 -1.2304 16 6 2.0735 -2.0972 -1.2825 17 6 2.5339 -2.7167 -2.4270 18 7 2.9325 -2.0077 -3.4663 19 6 2.9082 -0.6855 -3.4547 20 8 3.3269 0.0037 -4.5458 21 6 2.4575 0.0044 -2.3363 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 2.2489 -1.6318 1.1527 26 1 2.5502 1.7420 5.6530 27 1 1.7492 -2.6850 -0.4365 28 1 2.5684 -3.7952 -2.4725 29 1 2.6263 0.1913 -5.1853 30 1 2.4386 1.0842 -2.3304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355251289.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:49 Heat of formation + Delta-G solvation = -78.390985 kcal Electronic energy + Delta-G solvation = -16048.768464 eV Core-core repulsion = 13228.937780 eV Total energy + Delta-G solvation = -2819.830684 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.58325 -39.62007 -38.11921 -36.37347 -34.58977 -33.05076 -31.20418 -30.81532 -28.19975 -25.44199 -24.52048 -22.83672 -21.31911 -19.78217 -18.95463 -17.91183 -17.60240 -16.99807 -16.62373 -16.04037 -15.91318 -15.17354 -15.12321 -14.60458 -14.32033 -14.10300 -13.46352 -13.27562 -13.09892 -12.79845 -12.74601 -12.72666 -12.59867 -12.14220 -11.97314 -10.95198 -10.72159 -10.49797 -9.94667 -9.84019 -9.53179 -8.29275 -6.85500 0.01399 0.13197 1.40817 1.41538 1.58944 2.24549 2.47304 2.54491 2.73641 3.08369 3.45708 3.63939 3.80919 4.06512 4.09317 4.22250 4.40900 4.56484 4.68251 4.73214 4.89281 4.93966 5.23676 5.30967 5.33339 5.56775 5.87594 6.20078 6.25895 6.62659 6.87513 6.91397 7.52219 8.48816 8.67260 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.005486 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.124637 B = 5102.604845 C = 5331.250654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 H 0.057 0.943 4 N -0.747 5.747 5 C 0.541 3.459 6 O -0.628 6.628 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.996 3.004 12 H -0.246 1.246 13 H -0.271 1.271 14 H -0.269 1.269 15 C -0.025 4.025 16 C -0.173 4.173 17 C 0.129 3.871 18 N -0.528 5.528 19 C 0.306 3.694 20 O -0.491 6.491 21 C -0.187 4.187 22 H 0.034 0.966 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.395 0.605 26 H 0.274 0.726 27 H 0.156 0.844 28 H 0.197 0.803 29 H 0.420 0.580 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -8.263 -12.344 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.082 3.918 3 H 0.075 0.925 4 N -0.403 5.403 5 C 0.345 3.655 6 O -0.515 6.515 7 C -0.609 4.609 8 H 0.106 0.894 9 C -0.185 4.185 10 N -0.451 5.451 11 Si 0.816 3.184 12 H -0.169 1.169 13 H -0.196 1.196 14 H -0.194 1.194 15 C -0.034 4.034 16 C -0.193 4.193 17 C -0.027 4.027 18 N -0.248 5.248 19 C 0.127 3.873 20 O -0.302 6.302 21 C -0.208 4.208 22 H 0.053 0.947 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.230 0.770 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.213 0.787 29 H 0.281 0.719 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.405 -7.623 -12.751 14.922 hybrid contribution -0.379 0.338 1.140 1.248 sum -1.784 -7.285 -11.610 13.822 Atomic orbital electron populations 1.22043 0.93895 1.02671 1.01564 1.19435 0.94559 0.95422 0.82425 0.92530 1.45923 1.72317 1.13381 1.08632 1.18575 0.77556 0.86057 0.83301 1.90561 1.56837 1.18476 1.85625 1.21456 1.47130 0.98326 0.93939 0.89356 1.26941 0.92784 0.95113 1.03699 1.70186 1.36663 1.10530 1.27743 0.84989 0.78097 0.79431 0.75896 1.16887 1.19609 1.19359 1.20359 0.94193 0.94797 0.94037 1.22203 1.02270 0.93979 1.00886 1.23020 0.91689 1.01323 0.86629 1.67233 1.17378 1.08025 1.32118 1.19156 0.92991 0.87035 0.88091 1.84731 1.40076 1.72940 1.32421 1.22049 1.02177 1.02316 0.94270 0.94687 0.90366 0.90984 0.77012 0.91606 0.82655 0.78671 0.71906 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.47 71.98 0.68 -4.05 16 2 C 0.19 6.93 2.81 44.24 0.12 7.06 16 3 H 0.06 2.46 7.48 -2.39 -0.02 2.45 16 4 N -0.75 -32.10 5.03 -450.40 -2.27 -34.37 16 5 C 0.54 30.57 7.71 86.36 0.67 31.23 16 6 O -0.63 -41.18 14.68 -4.33 -0.06 -41.25 16 7 C -0.57 -31.73 9.54 24.83 0.24 -31.49 16 8 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 9 C 0.03 1.63 5.50 85.30 0.47 2.10 16 10 N -0.82 -49.83 11.83 21.83 0.26 -49.57 16 11 Si 1.00 40.34 29.56 68.60 2.03 42.37 16 12 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 C -0.03 -0.75 4.98 -19.69 -0.10 -0.84 16 16 C -0.17 -4.17 9.15 22.37 0.20 -3.97 16 17 C 0.13 2.82 11.18 84.62 0.95 3.77 16 18 N -0.53 -13.91 10.39 -308.95 -3.21 -17.12 16 19 C 0.31 8.09 7.74 84.79 0.66 8.74 16 20 O -0.49 -11.07 13.56 -90.00 -1.22 -12.29 16 21 C -0.19 -5.16 9.71 22.47 0.22 -4.94 16 22 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 23 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.39 14.43 6.92 -92.71 -0.64 13.79 16 26 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 27 H 0.16 3.20 7.00 -2.91 -0.02 3.18 16 28 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.42 4.73 9.06 -74.06 -0.67 4.06 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -78.26 271.30 -0.50 -78.75 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.13 Total: 25.87 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 4.11 Total: 7.61 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -5.22 Total: -101.06 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -1.28 Total: -53.54 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -78.26 -0.50 -78.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355251289.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.361 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds