Wall clock time and date at job start Mon Mar 30 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21682 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.46376 * 119.99803 * 180.02562 * 5 4 2 8 8 H 1.07995 * 120.00124 * 359.71785 * 7 5 4 9 9 C 1.40050 * 119.99863 * 180.02562 * 7 5 4 10 10 N 1.30676 * 119.99974 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00158 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47057 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 119.99672 * 11 9 7 14 14 H 1.48495 * 109.47216 * 239.99819 * 11 9 7 15 15 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 16 16 C 1.38830 * 120.75515 * 79.72337 * 15 2 1 17 17 C 1.38045 * 119.28605 * 179.74614 * 16 15 2 18 18 N 1.31963 * 120.83561 * 0.54544 * 17 16 15 19 19 C 1.32249 * 121.64821 * 359.70610 * 18 17 16 20 20 O 1.35677 * 119.68395 * 180.02562 * 19 18 17 21 21 C 1.38382 * 120.75892 * 260.00514 * 15 2 1 22 22 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 23 23 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 26 26 H 0.96996 * 119.99793 * 180.02562 * 10 9 7 27 27 H 1.07994 * 120.35271 * 0.02562 * 16 15 2 28 28 H 1.08005 * 119.58111 * 180.24955 * 17 16 15 29 29 H 0.96695 * 114.00171 * 270.02519 * 20 19 18 30 30 H 1.07995 * 120.44130 * 0.02562 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8572 1.1623 -2.4119 7 6 2.6345 -0.7084 -3.5524 8 1 2.8952 -1.7553 -3.5028 9 6 2.7687 -0.0097 -4.7587 10 7 2.4585 1.2584 -4.8172 11 14 3.3914 -0.8903 -6.2839 12 1 3.6715 -2.3112 -5.9554 13 1 2.3604 -0.8222 -7.3504 14 1 4.6380 -0.2374 -6.7581 15 6 2.0324 -0.7103 1.2305 16 6 2.0683 -2.0971 1.2847 17 6 2.5393 -2.7163 2.4251 18 7 2.9431 -2.0072 3.4622 19 6 2.9193 -0.6849 3.4503 20 8 3.3445 0.0045 4.5388 21 6 2.4629 0.0048 2.3342 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.2491 -1.6317 -1.1525 26 1 2.5511 1.7422 -5.6528 27 1 1.7358 -2.6850 0.4421 28 1 2.5732 -3.7948 2.4709 29 1 2.6477 0.1921 5.1824 30 1 2.4439 1.0845 2.3281 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355251300.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:51 Heat of formation + Delta-G solvation = -48.496505 kcal Electronic energy + Delta-G solvation = -16047.759050 eV Core-core repulsion = 13229.224688 eV Total energy + Delta-G solvation = -2818.534362 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48396 -37.91047 -36.90858 -34.77788 -32.53305 -31.49726 -30.15586 -29.29168 -26.17982 -24.12954 -23.46047 -21.35808 -19.57839 -18.39669 -17.39631 -16.72116 -16.02747 -15.58357 -15.32737 -14.49731 -14.36580 -13.89599 -13.58999 -13.05701 -12.88162 -12.44241 -12.07426 -11.81370 -11.67183 -11.63241 -11.09537 -11.04708 -10.70541 -10.51383 -10.23678 -9.53419 -9.41478 -8.91247 -8.90463 -7.69929 -7.64431 -6.24033 -4.69807 1.04158 1.25100 3.10320 3.18840 3.23001 3.49755 3.80412 4.06828 4.52350 4.55724 4.78612 4.88085 5.11502 5.17814 5.40020 5.60813 5.70758 5.79333 5.88854 5.99175 6.11658 6.22856 6.48716 6.58366 6.72857 7.38854 7.44167 7.82849 7.91836 7.99080 8.26237 8.97597 9.43391 10.53524 10.71513 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.005489 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.036397 B = 5099.930896 C = 5326.874225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.186 3.814 3 H 0.090 0.910 4 N -0.760 5.760 5 C 0.555 3.445 6 O -0.578 6.578 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.088 3.912 10 N -0.767 5.767 11 Si 0.908 3.092 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.015 4.015 16 C -0.174 4.174 17 C 0.121 3.879 18 N -0.512 5.512 19 C 0.305 3.695 20 O -0.484 6.484 21 C -0.178 4.178 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.380 0.620 26 H 0.268 0.732 27 H 0.140 0.860 28 H 0.160 0.840 29 H 0.397 0.603 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.403 -5.813 11.910 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 H 0.108 0.892 4 N -0.416 5.416 5 C 0.360 3.640 6 O -0.461 6.461 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.396 5.396 11 Si 0.732 3.268 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.201 1.201 15 C -0.023 4.023 16 C -0.194 4.194 17 C -0.035 4.035 18 N -0.232 5.232 19 C 0.127 3.873 20 O -0.290 6.290 21 C -0.200 4.200 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.213 0.787 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.177 0.823 29 H 0.254 0.746 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.771 -5.137 12.240 13.392 hybrid contribution -0.247 -0.425 -1.145 1.246 sum -2.018 -5.562 11.095 12.574 Atomic orbital electron populations 1.22154 0.95264 1.01579 1.02100 1.19458 0.93477 0.96946 0.82190 0.89235 1.46304 1.73393 1.12882 1.09042 1.18245 0.77851 0.86417 0.81497 1.90600 1.54780 1.16356 1.84361 1.20903 1.46717 0.97269 0.93218 0.91356 1.25705 0.93294 0.94462 0.99750 1.70025 1.35099 1.08182 1.26248 0.86313 0.78821 0.80306 0.81312 1.18759 1.20127 1.20147 1.20670 0.92573 0.93872 0.95189 1.22041 1.02503 0.94948 0.99953 1.22447 0.93444 0.99774 0.87824 1.67115 1.16968 1.07907 1.31180 1.19105 0.93480 0.86910 0.87807 1.84790 1.38787 1.73150 1.32292 1.22004 1.01762 1.01978 0.94261 0.93059 0.90990 0.92978 0.78725 0.92103 0.84188 0.82322 0.74618 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.47 37.16 0.35 -2.16 16 2 C 0.19 3.39 2.81 -69.09 -0.19 3.20 16 3 H 0.09 1.85 7.48 -51.93 -0.39 1.46 16 4 N -0.76 -16.23 5.03 -56.35 -0.28 -16.51 16 5 C 0.56 15.28 7.71 -12.99 -0.10 15.18 16 6 O -0.58 -18.10 14.68 5.21 0.08 -18.02 16 7 C -0.54 -15.02 9.54 -35.63 -0.34 -15.36 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 10 N -0.77 -22.63 11.83 55.55 0.66 -21.97 16 11 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 12 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 C -0.01 -0.22 4.97 -104.35 -0.52 -0.74 16 16 C -0.17 -2.32 9.14 -39.43 -0.36 -2.68 16 17 C 0.12 1.52 11.18 -17.57 -0.20 1.33 16 18 N -0.51 -7.41 10.39 -13.33 -0.14 -7.55 16 19 C 0.31 4.31 7.74 -17.12 -0.13 4.18 16 20 O -0.48 -5.88 13.56 -18.73 -0.25 -6.13 16 21 C -0.18 -2.55 9.71 -39.28 -0.38 -2.93 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.38 7.14 6.94 -40.82 -0.28 6.86 16 26 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 27 H 0.14 1.65 7.03 -52.49 -0.37 1.29 16 28 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.40 2.63 9.06 45.56 0.41 3.05 16 30 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -35.16 271.33 -5.13 -40.29 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.29 Total: 8.68 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.97 Total: 2.33 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.24 Total: -46.03 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.18 Total: -24.16 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.16 -5.13 -40.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355251300.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.202 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds