Wall clock time and date at job start Mon Mar 30 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48502 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46550 * 299.99689 * 3 2 1 6 6 H 1.48492 * 109.47285 * 59.99309 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21609 * 120.00089 * 0.02562 * 11 10 9 13 13 C 1.47396 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.37366 * 128.56738 * 0.02562 * 13 11 10 15 15 O 1.33486 * 106.34329 * 179.97438 * 14 13 11 16 16 N 1.20662 * 113.15978 * 359.97438 * 15 14 13 17 17 C 1.30016 * 112.30030 * 359.71872 * 16 15 14 18 18 C 1.50692 * 127.33725 * 180.29552 * 17 16 15 19 19 C 1.53001 * 117.50122 * 8.89935 * 18 17 16 20 20 C 1.52998 * 117.50318 * 300.23475 * 18 17 16 21 21 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 23 23 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 24 24 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 25 25 H 1.08004 * 126.82208 * 359.96303 * 14 13 11 26 26 H 1.09009 * 115.54984 * 154.55877 * 18 17 16 27 27 H 1.09004 * 117.49549 * 359.97438 * 19 18 17 28 28 H 1.08997 * 117.50549 * 145.01613 * 19 18 17 29 29 H 1.09002 * 117.49989 * 214.97795 * 20 18 17 30 30 H 1.09001 * 117.49573 * 359.97294 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5580 -5.1055 0.0108 13 6 2.7114 -6.0037 0.0068 14 6 4.0843 -5.9567 0.0026 15 8 4.5035 -7.2241 0.0058 16 7 3.5993 -8.0230 0.0116 17 6 2.4331 -7.4482 0.0194 18 6 1.0837 -8.1188 0.0344 19 6 1.0496 -9.6329 0.2515 20 6 0.7447 -9.0505 -1.1309 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 3.1567 -3.4355 0.0009 25 1 4.7016 -5.0705 -0.0024 26 1 0.2712 -7.5308 0.4614 27 1 2.0033 -10.1441 0.3831 28 1 0.2146 -10.0411 0.8209 29 1 -0.2908 -9.0757 -1.4704 30 1 1.4977 -9.1780 -1.9087 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356047767.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:53 Heat of formation + Delta-G solvation = 41.564240 kcal Electronic energy + Delta-G solvation = -15876.902745 eV Core-core repulsion = 13062.273710 eV Total energy + Delta-G solvation = -2814.629035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.81839 -38.76596 -37.41370 -34.31110 -33.15062 -32.44924 -31.62897 -27.53757 -24.79029 -24.12504 -22.51422 -22.27618 -20.41948 -19.75886 -18.28334 -17.60044 -16.82596 -15.86955 -15.41082 -15.24052 -14.76026 -14.33931 -14.21015 -13.49272 -12.90085 -12.09341 -12.04495 -11.96710 -11.65482 -11.62843 -11.27691 -11.00409 -10.96645 -10.45170 -10.38129 -9.60975 -9.47865 -9.46379 -9.38243 -8.81780 -8.01215 -6.22885 -4.30404 1.24042 1.81390 3.06330 3.20023 3.27333 3.29919 3.68714 3.80529 3.86581 4.13512 4.29867 4.33204 4.89036 4.93780 5.02907 5.06636 5.13812 5.43630 5.55836 5.59926 5.74766 5.95134 6.04403 6.21383 7.20720 7.27019 7.42626 7.57358 7.88622 8.24420 8.47744 8.68134 8.92968 9.36287 10.87326 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.005156 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.707358 B = 5429.446753 C = 5993.680569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.702 5.702 11 C 0.575 3.425 12 O -0.541 6.541 13 C -0.232 4.232 14 C -0.018 4.018 15 O 0.093 5.907 16 N -0.364 5.364 17 C 0.096 3.904 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.159 4.159 21 H 0.266 0.734 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.389 0.611 25 H 0.227 0.773 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -13.052 -0.313 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.350 5.350 11 C 0.359 3.641 12 O -0.420 6.420 13 C -0.240 4.240 14 C -0.100 4.100 15 O 0.033 5.967 16 N -0.071 5.071 17 C -0.066 4.066 18 C -0.101 4.101 19 C -0.205 4.205 20 C -0.197 4.197 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.222 0.778 25 H 0.243 0.757 26 H 0.158 0.842 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.325 -14.285 -0.309 15.626 hybrid contribution 0.523 1.950 0.002 2.019 sum 6.848 -12.335 -0.307 14.112 Atomic orbital electron populations 1.69982 1.06132 1.27324 1.48698 1.24947 0.94919 0.99495 0.94571 0.86346 0.79804 0.82865 0.77811 1.19600 1.20752 1.20757 1.21228 0.93310 0.90303 1.53515 0.91764 1.19195 0.88190 0.81570 0.98093 1.46354 1.11210 1.05576 1.71831 1.16912 0.86981 0.81961 0.78228 1.90747 1.15609 1.84580 1.51087 1.22675 0.93869 0.94870 1.12564 1.26417 0.94882 0.89379 0.99310 1.84529 1.31663 1.12947 1.67573 1.73556 0.96986 1.15874 1.20713 1.23832 0.93827 0.89419 0.99488 1.20369 0.92159 0.92030 1.05492 1.23046 1.03689 0.94149 0.99661 1.23008 1.02984 1.02052 0.91625 0.92403 0.95162 0.95156 0.77807 0.75681 0.84178 0.88263 0.87971 0.87722 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.37 16 10 N -0.70 -14.20 5.54 -62.57 -0.35 -14.55 16 11 C 0.58 11.55 7.81 -12.53 -0.10 11.45 16 12 O -0.54 -12.78 15.80 5.27 0.08 -12.70 16 13 C -0.23 -3.75 6.47 -102.89 -0.67 -4.42 16 14 C -0.02 -0.22 11.85 30.41 0.36 0.14 16 15 O 0.09 1.21 11.06 18.67 0.21 1.42 16 16 N -0.36 -5.41 11.71 34.78 0.41 -5.00 16 17 C 0.10 1.52 7.07 -79.77 -0.56 0.95 16 18 C -0.08 -1.18 5.89 -91.78 -0.54 -1.72 16 19 C -0.17 -1.93 10.17 -26.69 -0.27 -2.20 16 20 C -0.16 -1.90 10.24 -26.69 -0.27 -2.18 16 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.39 6.46 7.51 -40.82 -0.31 6.15 16 25 H 0.23 1.69 7.68 -52.48 -0.40 1.29 16 26 H 0.14 2.22 7.29 -51.92 -0.38 1.84 16 27 H 0.10 1.15 7.97 -51.93 -0.41 0.74 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -31.68 275.00 -5.44 -37.12 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.15 Total: 3.58 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.50 Total: -4.54 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.80 Total: -44.26 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.29 Total: -11.28 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.68 -5.44 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356047767.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.681 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds