Wall clock time and date at job start Mon Mar 30 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48502 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46550 * 299.99689 * 3 2 1 6 6 H 1.48492 * 109.47285 * 59.99309 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21609 * 120.00089 * 0.02562 * 11 10 9 13 13 C 1.47396 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.37366 * 128.56738 * 0.02562 * 13 11 10 15 15 O 1.33486 * 106.34329 * 179.97438 * 14 13 11 16 16 N 1.20662 * 113.15978 * 359.97438 * 15 14 13 17 17 C 1.30016 * 112.30030 * 359.71872 * 16 15 14 18 18 C 1.50692 * 127.33725 * 180.29552 * 17 16 15 19 19 C 1.53001 * 117.50122 * 8.89935 * 18 17 16 20 20 C 1.52998 * 117.50318 * 300.23475 * 18 17 16 21 21 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 23 23 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 24 24 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 25 25 H 1.08004 * 126.82208 * 359.96303 * 14 13 11 26 26 H 1.09009 * 115.54984 * 154.55877 * 18 17 16 27 27 H 1.09004 * 117.49549 * 359.97438 * 19 18 17 28 28 H 1.08997 * 117.50549 * 145.01613 * 19 18 17 29 29 H 1.09002 * 117.49989 * 214.97795 * 20 18 17 30 30 H 1.09001 * 117.49573 * 359.97294 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5580 -5.1055 0.0108 13 6 2.7114 -6.0037 0.0068 14 6 4.0843 -5.9567 0.0026 15 8 4.5035 -7.2241 0.0058 16 7 3.5993 -8.0230 0.0116 17 6 2.4331 -7.4482 0.0194 18 6 1.0837 -8.1188 0.0344 19 6 1.0496 -9.6329 0.2515 20 6 0.7447 -9.0505 -1.1309 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8902 24 1 3.1567 -3.4355 0.0009 25 1 4.7016 -5.0705 -0.0024 26 1 0.2712 -7.5308 0.4614 27 1 2.0033 -10.1441 0.3831 28 1 0.2146 -10.0411 0.8209 29 1 -0.2908 -9.0757 -1.4704 30 1 1.4977 -9.1780 -1.9087 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356047767.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:53 Heat of formation + Delta-G solvation = 19.432296 kcal Electronic energy + Delta-G solvation = -15877.862458 eV Core-core repulsion = 13062.273710 eV Total energy + Delta-G solvation = -2815.588748 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.96784 -40.42560 -38.45162 -36.19212 -34.61772 -34.05531 -32.88992 -29.46400 -26.26207 -25.29936 -24.17525 -23.35385 -21.81278 -21.05028 -19.72799 -18.73929 -18.36428 -17.46151 -17.06346 -16.44888 -16.30255 -16.08914 -15.55872 -14.86045 -14.38795 -13.99560 -13.97668 -13.18838 -12.89791 -12.75916 -12.71774 -12.57151 -12.33164 -12.20896 -11.49034 -11.45131 -11.06294 -10.83577 -10.80322 -10.54683 -9.88818 -8.28269 -6.44666 0.09525 0.63664 1.46285 1.46912 1.60195 1.95601 2.19208 2.32940 2.50598 2.79420 2.97042 3.07829 3.21486 3.82243 3.86402 4.01413 4.04722 4.11327 4.60277 4.64998 4.71204 4.91205 5.08478 5.13225 5.15141 5.23341 5.43248 5.64795 5.83404 6.64440 6.79895 7.16652 7.22048 7.37533 8.84232 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.005156 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.707358 B = 5429.446753 C = 5993.680569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.266 3.734 10 N -0.694 5.694 11 C 0.578 3.422 12 O -0.587 6.587 13 C -0.276 4.276 14 C 0.034 3.966 15 O 0.104 5.896 16 N -0.371 5.371 17 C 0.087 3.913 18 C -0.116 4.116 19 C -0.145 4.145 20 C -0.151 4.151 21 H 0.268 0.732 22 H -0.008 1.008 23 H -0.008 1.008 24 H 0.410 0.590 25 H 0.277 0.723 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -13.108 -0.399 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.144 3.856 10 N -0.343 5.343 11 C 0.365 3.635 12 O -0.469 6.469 13 C -0.284 4.284 14 C -0.048 4.048 15 O 0.045 5.955 16 N -0.078 5.078 17 C -0.075 4.075 18 C -0.135 4.135 19 C -0.182 4.182 20 C -0.189 4.189 21 H 0.077 0.923 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.247 0.753 25 H 0.293 0.707 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.299 -14.382 -0.395 17.131 hybrid contribution -0.372 1.893 0.031 1.929 sum 8.926 -12.489 -0.364 15.355 Atomic orbital electron populations 1.70145 1.08335 1.28516 1.50029 1.26047 0.95720 1.03881 0.93867 0.85112 0.79276 0.77335 0.77500 1.17280 1.20694 1.20712 1.21640 0.94519 0.90212 1.52786 0.89275 1.18635 0.88594 0.83825 0.94542 1.45969 1.11475 1.04614 1.72248 1.17347 0.87082 0.82534 0.76505 1.90719 1.18019 1.85291 1.52911 1.22225 0.94976 0.93763 1.17439 1.27197 0.93494 0.90063 0.94032 1.84534 1.31026 1.13198 1.66707 1.73563 0.96654 1.16204 1.21373 1.24039 0.94553 0.89472 0.99423 1.20359 0.91450 0.93551 1.08138 1.23121 1.04467 0.91517 0.99110 1.23099 1.03724 1.00503 0.91611 0.92278 0.99030 0.99032 0.75329 0.70733 0.86591 0.88044 0.85982 0.86521 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.98 40.86 29.54 68.60 2.03 42.88 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -28.78 9.28 25.60 0.24 -28.54 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.13 5.43 85.63 0.46 14.59 16 10 N -0.69 -28.05 5.54 -470.14 -2.61 -30.65 16 11 C 0.58 23.67 7.81 86.66 0.68 24.34 16 12 O -0.59 -29.33 15.80 -4.06 -0.06 -29.40 16 13 C -0.28 -8.65 6.47 -18.74 -0.12 -8.77 16 14 C 0.03 0.70 11.85 67.61 0.80 1.50 16 15 O 0.10 2.38 11.06 77.04 0.85 3.23 16 16 N -0.37 -10.30 11.71 -44.77 -0.52 -10.82 16 17 C 0.09 2.69 7.07 45.16 0.32 3.01 16 18 C -0.12 -3.40 5.89 -11.54 -0.07 -3.47 16 19 C -0.14 -3.15 10.17 30.62 0.31 -2.84 16 20 C -0.15 -3.54 10.24 30.62 0.31 -3.23 16 21 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H 0.41 12.72 7.51 -92.70 -0.70 12.02 16 25 H 0.28 2.55 7.68 -2.91 -0.02 2.53 16 26 H 0.12 3.93 7.29 -2.38 -0.02 3.92 16 27 H 0.10 2.18 7.97 -2.39 -0.02 2.16 16 28 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -72.12 275.00 3.84 -68.28 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.48 Total: 13.89 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 3.40 Total: -2.70 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -2.85 Total: -96.19 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.79 Total: -26.17 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -72.12 3.84 -68.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356047767.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.714 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds