Wall clock time and date at job start Mon Mar 30 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48504 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46966 * 299.99632 * 3 2 1 6 6 H 1.48498 * 109.47174 * 59.99559 * 3 2 1 7 7 C 1.37878 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47309 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47260 * 180.02562 * 10 9 7 12 12 O 1.21739 * 119.99865 * 0.02562 * 11 10 9 13 13 N 1.32241 * 120.00132 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99841 * 235.47015 * 13 11 10 15 15 C 1.41030 * 120.70879 * 5.34556 * 14 13 11 16 16 C 1.35413 * 119.33777 * 179.97438 * 15 14 13 17 17 N 1.34769 * 120.85120 * 0.02562 * 16 15 14 18 18 H 0.96998 * 119.23369 * 180.02562 * 17 16 15 19 19 C 1.35594 * 121.52400 * 359.97438 * 17 16 15 20 20 C 1.35791 * 120.58893 * 359.73639 * 19 17 16 21 21 O 1.36036 * 120.44851 * 180.25877 * 20 19 17 22 22 H 0.96997 * 119.99508 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46575 * 60.00024 * 9 7 2 24 24 H 1.08996 * 109.47366 * 300.00446 * 9 7 2 25 25 H 1.08994 * 109.47017 * 60.00018 * 10 9 7 26 26 H 1.09004 * 109.46923 * 300.00106 * 10 9 7 27 27 H 1.08001 * 120.32841 * 359.95701 * 15 14 13 28 28 H 1.08002 * 119.57616 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.70496 * 180.02562 * 19 17 16 30 30 H 0.96691 * 113.99668 * 270.25785 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4919 -4.9671 0.0033 12 8 0.2745 -4.9671 0.0024 13 7 2.1531 -6.1124 0.0037 14 6 1.9170 -7.0271 -0.9575 15 6 1.0523 -6.7352 -2.0327 16 6 0.8353 -7.6747 -2.9835 17 7 1.4336 -8.8802 -2.9132 18 1 1.2618 -9.5356 -3.6073 19 6 2.2711 -9.1977 -1.8951 20 6 2.5361 -8.2989 -0.9124 21 8 3.3808 -8.6186 0.1048 22 1 -0.4849 0.8401 -0.0004 23 1 0.6241 -2.5574 -0.8881 24 1 0.6248 -2.5563 0.8919 25 1 2.8719 -3.6035 0.8926 26 1 2.8720 -3.6051 -0.8873 27 1 0.5679 -5.7721 -2.0970 28 1 0.1742 -7.4551 -3.8088 29 1 2.7352 -10.1726 -1.8681 30 1 2.9441 -9.0256 0.8654 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360175119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:36:59 Heat of formation + Delta-G solvation = -60.506993 kcal Electronic energy + Delta-G solvation = -15792.843062 eV Core-core repulsion = 12973.787887 eV Total energy + Delta-G solvation = -2819.055176 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.96785 -40.28754 -38.27448 -35.88622 -35.44021 -33.08869 -31.99791 -31.20587 -27.91921 -25.44538 -24.29471 -23.10911 -20.58059 -20.32818 -18.81542 -18.43626 -18.00502 -17.56125 -16.54463 -16.35139 -16.22319 -15.84620 -15.32252 -14.80230 -14.61104 -14.28092 -13.80355 -13.66547 -13.31965 -12.85373 -12.52741 -12.23504 -11.99768 -11.76161 -11.68257 -11.41663 -11.19001 -10.61772 -10.43788 -10.04628 -8.51361 -8.21253 -6.37368 -0.14283 0.17627 1.37670 1.41175 1.49046 1.55286 1.92967 2.38934 2.49432 3.09183 3.23253 3.36800 3.76980 3.97643 4.09354 4.33364 4.47742 4.50457 4.66592 4.83120 4.92028 5.14063 5.41099 5.53158 5.62156 5.71524 5.77776 6.14284 6.23246 6.58871 6.79674 6.92281 7.32025 7.48730 8.91487 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.046667 B = 0.004780 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.850562 B = 5856.585843 C = 6084.792611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.048 3.952 10 C -0.119 4.119 11 C 0.494 3.506 12 O -0.586 6.586 13 N -0.684 5.684 14 C 0.264 3.736 15 C -0.300 4.300 16 C 0.189 3.811 17 N -0.534 5.534 18 H 0.457 0.543 19 C 0.149 3.851 20 C -0.007 4.007 21 O -0.481 6.481 22 H 0.265 0.735 23 H -0.016 1.016 24 H -0.022 1.022 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.222 0.778 29 H 0.237 0.763 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -26.823 -11.866 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.011 3.989 10 C -0.159 4.159 11 C 0.284 3.716 12 O -0.468 6.468 13 N -0.426 5.426 14 C 0.113 3.887 15 C -0.328 4.328 16 C 0.055 3.945 17 N -0.139 5.139 18 H 0.301 0.699 19 C 0.016 3.984 20 C -0.060 4.060 21 O -0.289 6.289 22 H 0.074 0.926 23 H 0.003 0.997 24 H -0.004 1.004 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.239 0.761 29 H 0.253 0.747 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.932 -26.284 -11.470 29.099 hybrid contribution -0.878 1.283 0.311 1.586 sum 4.054 -25.001 -11.159 27.677 Atomic orbital electron populations 1.70196 1.08311 1.27953 1.51181 1.26203 0.95873 1.04026 0.94163 0.85167 0.78917 0.77439 0.78049 1.18147 1.19713 1.20075 1.21701 0.93707 0.91802 1.51467 0.91450 1.18661 0.93436 0.92460 0.94365 1.21610 0.99330 0.92206 1.02767 1.21791 0.86993 0.90978 0.71879 1.90641 1.18388 1.90943 1.46815 1.68393 1.38156 1.05378 1.30650 1.20161 0.87023 0.91521 0.89985 1.21524 1.08436 1.03335 0.99504 1.22172 0.92144 0.83072 0.97160 1.41065 1.35330 1.14188 1.23344 0.69933 1.22708 0.89597 1.00363 0.85774 1.17577 1.01777 0.90876 0.95806 1.84917 1.33329 1.82543 1.28156 0.92584 0.99720 1.00357 0.90159 0.89676 0.87331 0.76129 0.74713 0.74633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.15 13.29 21.45 0.28 -62.87 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 3 Si 0.98 47.79 29.54 68.60 2.03 49.81 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.55 -35.52 9.11 25.60 0.23 -35.29 16 8 H 0.07 4.10 7.74 -2.91 -0.02 4.08 16 9 C 0.05 3.16 4.26 29.85 0.13 3.29 16 10 C -0.12 -6.59 5.71 29.85 0.17 -6.42 16 11 C 0.49 26.58 6.29 88.05 0.55 27.14 16 12 O -0.59 -35.05 15.23 -4.47 -0.07 -35.12 16 13 N -0.68 -31.40 10.25 -306.19 -3.14 -34.54 16 14 C 0.26 8.90 6.56 40.18 0.26 9.17 16 15 C -0.30 -8.54 8.92 22.30 0.20 -8.34 16 16 C 0.19 1.95 11.14 83.59 0.93 2.88 16 17 N -0.53 -0.68 5.21 -195.17 -1.02 -1.69 16 18 H 0.46 -4.51 8.89 -92.71 -0.82 -5.33 16 19 C 0.15 0.83 11.12 83.54 0.93 1.76 16 20 C -0.01 -0.16 6.72 22.51 0.15 0.00 16 21 O -0.48 -10.48 13.32 -93.96 -1.25 -11.73 16 22 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 23 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 24 H -0.02 -1.60 8.10 -2.39 -0.02 -1.62 16 25 H 0.08 4.30 8.14 -2.39 -0.02 4.28 16 26 H 0.08 4.39 8.14 -2.39 -0.02 4.37 16 27 H 0.11 4.17 6.42 -2.91 -0.02 4.15 16 28 H 0.22 0.20 8.06 -2.91 -0.02 0.17 16 29 H 0.24 -1.30 8.06 -2.91 -0.02 -1.33 16 30 H 0.40 5.64 9.06 -74.06 -0.67 4.97 16 Total: -1.00 -109.33 272.46 0.54 -108.79 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: -0.31 Total: -6.96 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.02 Total: -5.69 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -3.87 Total: -99.10 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.32 Total: -46.85 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -109.33 0.54 -108.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360175119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.282 kcal (2) G-P(sol) polarization free energy of solvation -109.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds