Wall clock time and date at job start Mon Mar 30 2020 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36854 * 120.00388 * 2 1 4 4 H 1.07996 * 120.00507 * 201.58586 * 3 2 1 5 5 C 1.39032 * 119.99777 * 21.31303 * 3 2 1 6 6 N 1.31388 * 120.00025 * 11.92515 * 5 3 2 7 7 Si 1.86793 * 120.00053 * 191.93024 * 5 3 2 8 8 H 1.48500 * 109.47389 * 59.99904 * 7 5 3 9 9 H 1.48500 * 109.47252 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47371 * 299.99875 * 7 5 3 11 11 C 1.34778 * 119.99609 * 180.02562 * 2 1 3 12 12 O 1.21736 * 119.99661 * 174.52903 * 11 2 1 13 13 C 1.46580 * 120.00249 * 354.52670 * 11 2 1 14 14 O 1.35349 * 126.65015 * 353.50795 * 13 11 2 15 15 C 1.33706 * 107.67736 * 179.87363 * 14 13 11 16 16 N 1.30621 * 109.17111 * 0.39893 * 15 14 13 17 17 C 1.33665 * 109.01191 * 359.75340 * 16 15 14 18 18 C 1.50701 * 126.28016 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.50153 * 8.72090 * 18 17 16 20 20 C 1.52997 * 117.49951 * 300.06074 * 18 17 16 21 21 H 1.09004 * 109.47286 * 33.69768 * 1 2 3 22 22 H 1.08995 * 109.47796 * 153.70329 * 1 2 3 23 23 H 1.09004 * 109.47226 * 273.69949 * 1 2 3 24 24 H 0.96995 * 120.00197 * 180.02562 * 6 5 3 25 25 H 1.08002 * 125.41216 * 180.15323 * 15 14 13 26 26 H 1.09006 * 115.55298 * 154.38986 * 18 17 16 27 27 H 1.09008 * 117.49839 * 359.97438 * 19 18 17 28 28 H 1.09002 * 117.50187 * 145.02062 * 19 18 17 29 29 H 1.09004 * 117.49808 * 214.98012 * 20 18 17 30 30 H 1.08998 * 117.49817 * 359.97419 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1851 0.0000 4 1 3.1725 1.2180 -0.3441 5 6 1.5255 2.3480 0.4376 6 7 0.3735 2.2791 1.0658 7 14 2.3250 4.0084 0.1325 8 1 2.4896 4.2176 -1.3285 9 1 1.4652 5.0822 0.6920 10 1 3.6556 4.0456 0.7908 11 6 2.1388 -1.1673 -0.0005 12 8 3.3520 -1.1696 -0.1010 13 6 1.4108 -2.4338 0.1200 14 8 0.0875 -2.5854 0.3603 15 6 -0.1718 -3.8967 0.3919 16 7 0.9364 -4.5581 0.1898 17 6 1.9370 -3.6888 0.0175 18 6 3.3812 -4.0317 -0.2428 19 6 3.7200 -5.4971 -0.5230 20 6 4.1116 -4.8628 0.8140 21 1 -0.3634 0.8550 -0.5702 22 1 -0.3634 -0.9212 -0.4552 23 1 -0.3634 0.0663 1.0256 24 1 -0.0619 3.0904 1.3708 25 1 -1.1424 -4.3388 0.5618 26 1 3.9569 -3.2721 -0.7718 27 1 2.8983 -6.2134 -0.5186 28 1 4.5187 -5.7017 -1.2360 29 1 5.1677 -4.6502 0.9799 30 1 3.5476 -5.1612 1.6977 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362698904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:03 Heat of formation + Delta-G solvation = 28.541941 kcal Electronic energy + Delta-G solvation = -16662.320745 eV Core-core repulsion = 13847.127021 eV Total energy + Delta-G solvation = -2815.193724 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.85016 -38.29301 -37.02971 -34.88191 -33.85848 -31.79527 -29.78484 -26.52259 -25.14655 -23.39587 -22.80277 -21.99476 -20.42727 -19.40819 -17.29810 -16.67997 -16.30008 -16.08805 -15.08879 -14.74319 -14.37050 -14.07790 -13.81611 -13.21268 -12.78733 -11.96923 -11.67614 -11.52182 -11.36632 -11.25491 -11.14428 -10.95234 -10.54642 -10.49088 -10.25692 -10.02239 -9.98523 -9.20517 -8.77104 -8.21841 -7.87732 -6.53018 -4.03258 1.51134 2.87992 3.11880 3.13542 3.16245 3.22779 3.98088 4.04903 4.34494 4.42657 4.74489 4.95848 4.99966 5.30759 5.41844 5.62280 5.84349 5.92773 6.00586 6.12300 6.16045 6.45028 6.47181 6.65312 6.72714 6.82912 7.15383 7.36473 7.85487 8.09040 8.29129 8.94692 9.16619 9.73972 10.48238 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.037622 B = 0.007335 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.061524 B = 3816.189841 C = 4439.933982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.416 5.416 3 C -0.304 4.304 4 H 0.108 0.892 5 C 0.032 3.968 6 N -0.867 5.867 7 Si 0.935 3.065 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.269 1.269 11 C 0.504 3.496 12 O -0.568 6.568 13 C -0.045 4.045 14 O -0.185 6.185 15 C 0.148 3.852 16 N -0.488 5.488 17 C 0.054 3.946 18 C -0.067 4.067 19 C -0.171 4.171 20 C -0.164 4.164 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.273 0.727 25 H 0.244 0.756 26 H 0.136 0.864 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -8.124 -1.368 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.131 5.131 3 C -0.432 4.432 4 H 0.125 0.875 5 C -0.173 4.173 6 N -0.504 5.504 7 Si 0.761 3.239 8 H -0.195 1.195 9 H -0.207 1.207 10 H -0.194 1.194 11 C 0.292 3.708 12 O -0.455 6.455 13 C -0.101 4.101 14 O -0.071 6.071 15 C -0.077 4.077 16 N -0.217 5.217 17 C -0.070 4.070 18 C -0.086 4.086 19 C -0.208 4.208 20 C -0.201 4.201 21 H 0.090 0.910 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.260 0.740 26 H 0.153 0.847 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.480 -8.520 -1.325 8.749 hybrid contribution -0.287 1.460 0.108 1.492 sum -1.768 -7.060 -1.217 7.379 Atomic orbital electron populations 1.21777 0.80209 0.99181 1.02648 1.43593 1.06256 1.04666 1.58552 1.19784 0.99261 0.83248 1.40912 0.87477 1.25499 0.96330 1.00554 0.94923 1.70008 1.16407 1.29967 1.34044 0.85846 0.79115 0.79854 0.79093 1.19547 1.20673 1.19401 1.16249 0.86208 0.80585 0.87725 1.90672 1.11838 1.84754 1.58205 1.23725 0.80084 0.98295 1.08029 1.84813 1.26144 1.28593 1.67525 1.27952 1.00006 0.77927 1.01787 1.70023 0.98640 1.35192 1.17864 1.20729 0.95045 0.87454 1.03793 1.20342 0.88940 0.94944 1.04359 1.22953 1.03201 0.95549 0.99109 1.22892 1.00482 1.03568 0.93192 0.91015 0.94004 0.91678 0.91621 0.74000 0.84660 0.88264 0.88873 0.88519 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 7.94 59.84 0.48 2.90 16 2 N -0.42 -10.87 3.01 -123.73 -0.37 -11.24 16 3 C -0.30 -8.32 9.33 -15.02 -0.14 -8.46 16 4 H 0.11 3.00 7.35 -52.49 -0.39 2.62 16 5 C 0.03 0.83 5.12 -17.45 -0.09 0.74 16 6 N -0.87 -22.39 10.55 55.50 0.59 -21.80 16 7 Si 0.94 19.92 29.57 -169.99 -5.03 14.90 16 8 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 C 0.50 12.93 7.58 -12.90 -0.10 12.83 16 12 O -0.57 -15.62 14.62 5.16 0.08 -15.54 16 13 C -0.05 -1.00 6.72 -36.86 -0.25 -1.24 16 14 O -0.19 -3.52 7.59 4.30 0.03 -3.49 16 15 C 0.15 2.28 13.21 52.25 0.69 2.97 16 16 N -0.49 -8.72 10.88 -10.85 -0.12 -8.84 16 17 C 0.05 1.08 6.67 -82.43 -0.55 0.53 16 18 C -0.07 -1.24 5.56 -91.77 -0.51 -1.75 16 19 C -0.17 -2.52 10.15 -26.70 -0.27 -2.79 16 20 C -0.16 -2.56 10.24 -26.70 -0.27 -2.83 16 21 H 0.07 1.69 7.10 -51.93 -0.37 1.32 16 22 H 0.04 0.87 5.29 -51.93 -0.27 0.59 16 23 H 0.06 1.56 7.48 -51.93 -0.39 1.17 16 24 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 25 H 0.24 2.24 8.06 -52.49 -0.42 1.81 16 26 H 0.14 2.71 6.77 -51.93 -0.35 2.36 16 27 H 0.10 1.47 7.92 -51.92 -0.41 1.06 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 262.76 15.07 3.96 3.96 Total: -1.00 -30.44 262.76 -4.88 -35.32 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.01 Total: 3.84 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.01 Total: 2.90 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.09 Total: -41.88 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.11 Total: -19.03 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.44 -4.88 -35.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362698904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.864 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds