Wall clock time and date at job start Mon Mar 30 2020 17:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35736 * 116.99810 * 2 1 4 4 C 1.39254 * 120.37352 * 179.97438 * 3 2 1 5 5 C 1.38284 * 118.45569 * 180.02562 * 4 3 2 6 6 C 1.39558 * 119.12853 * 359.97438 * 5 4 3 7 7 C 1.47775 * 119.66768 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99950 * 357.22219 * 7 6 5 9 9 N 1.34779 * 120.00035 * 177.21504 * 7 6 5 10 10 C 1.46497 * 120.00168 * 355.06368 * 9 7 6 11 11 C 1.36818 * 119.99931 * 174.77982 * 9 7 6 12 12 H 1.08000 * 120.00383 * 327.41666 * 11 9 7 13 13 C 1.39076 * 120.00264 * 147.41246 * 11 9 7 14 14 N 1.31339 * 120.00399 * 163.08873 * 13 11 9 15 15 Si 1.86808 * 119.99575 * 343.09689 * 13 11 9 16 16 H 1.48501 * 109.47376 * 91.27443 * 15 13 11 17 17 H 1.48500 * 109.46726 * 211.27597 * 15 13 11 18 18 H 1.48503 * 109.46811 * 331.27163 * 15 13 11 19 19 N 1.32859 * 120.66443 * 0.25503 * 6 5 4 20 20 C 1.31389 * 121.68651 * 359.47957 * 19 6 5 21 21 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47708 * 300.00808 * 1 2 3 23 23 H 1.09006 * 109.47015 * 60.00668 * 1 2 3 24 24 H 1.08008 * 120.76912 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.43707 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.46960 * 63.10875 * 10 9 7 27 27 H 1.08995 * 109.47228 * 183.10967 * 10 9 7 28 28 H 1.08998 * 109.46841 * 303.11131 * 10 9 7 29 29 H 0.97002 * 119.99938 * 180.02562 * 14 13 11 30 30 H 1.07997 * 119.59624 * 180.26781 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4353 1.2914 0.0005 5 6 4.0215 2.5439 0.0011 6 6 3.2053 3.6759 0.0005 7 6 3.8191 5.0202 0.0016 8 8 5.0283 5.1363 0.0541 9 7 3.0385 6.1174 -0.0556 10 6 1.5904 5.9781 -0.2279 11 6 3.5979 7.3613 0.0529 12 1 4.4717 7.5085 0.6704 13 6 3.0414 8.4363 -0.6318 14 7 3.3494 9.6654 -0.2864 15 14 1.8557 8.1319 -2.0429 16 1 0.4652 8.0985 -1.5227 17 1 1.9845 9.2231 -3.0418 18 1 2.1750 6.8319 -2.6860 19 7 1.8820 3.5572 0.0045 20 6 1.2945 2.3820 -0.0010 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 4.0415 0.3975 0.0014 25 1 5.0968 2.6447 0.0011 26 1 1.1712 5.4534 0.6307 27 1 1.1371 6.9662 -0.3067 28 1 1.3855 5.4109 -1.1359 29 1 2.9609 10.4152 -0.7638 30 1 0.2161 2.3248 -0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362700243.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:05 Heat of formation + Delta-G solvation = -2.462527 kcal Electronic energy + Delta-G solvation = -16456.244783 eV Core-core repulsion = 13639.706605 eV Total energy + Delta-G solvation = -2816.538179 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59231 -38.84466 -37.38778 -34.89824 -32.49652 -31.88977 -30.31651 -27.74359 -26.35582 -25.42073 -23.53179 -22.66575 -19.73000 -18.17856 -17.19697 -16.91809 -16.35719 -15.98101 -15.57877 -14.72707 -14.53275 -14.18604 -13.74062 -13.29945 -13.14706 -12.84134 -12.39807 -12.30491 -12.06145 -12.01384 -11.65718 -11.49534 -10.61309 -10.33797 -9.90407 -9.60067 -9.25494 -9.19274 -8.50375 -8.31819 -7.77425 -6.46182 -3.95759 1.05264 1.37779 3.04418 3.07853 3.20778 3.27163 3.48122 4.10459 4.31547 4.38316 4.58372 4.65753 4.87850 4.94325 5.04646 5.17521 5.23202 5.30539 5.56889 5.80858 5.96013 6.14543 6.23423 6.39719 6.55760 6.71320 7.14840 7.47765 8.02395 8.20749 8.49208 8.89819 9.25431 9.75961 10.64540 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.007157 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.345277 B = 3911.248483 C = 4430.488909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.115 4.115 5 C -0.085 4.085 6 C 0.073 3.927 7 C 0.492 3.508 8 O -0.571 6.571 9 N -0.436 5.436 10 C 0.073 3.927 11 C -0.307 4.307 12 H 0.112 0.888 13 C 0.055 3.945 14 N -0.857 5.857 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.264 1.264 19 N -0.428 5.428 20 C 0.013 3.987 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.142 0.858 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.277 0.723 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -16.298 -0.756 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.141 4.141 5 C -0.106 4.106 6 C -0.066 4.066 7 C 0.281 3.719 8 O -0.455 6.455 9 N -0.153 5.153 10 C -0.070 4.070 11 C -0.435 4.435 12 H 0.130 0.870 13 C -0.152 4.152 14 N -0.493 5.493 15 Si 0.721 3.279 16 H -0.200 1.200 17 H -0.216 1.216 18 H -0.188 1.188 19 N -0.141 5.141 20 C -0.147 4.147 21 H 0.118 0.882 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.160 0.840 25 H 0.170 0.830 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.402 -15.420 -0.751 17.577 hybrid contribution -0.574 -0.697 -0.748 1.173 sum -8.976 -16.118 -1.499 18.509 Atomic orbital electron populations 1.23091 0.78261 1.04018 1.01685 1.86005 1.21467 1.26459 1.88683 1.20236 0.93287 0.85511 0.98787 1.20838 0.91445 0.98624 1.03197 1.21958 1.02300 0.90525 0.95782 1.21641 0.88711 0.95873 1.00376 1.17470 0.86414 0.82417 0.85576 1.90651 1.13174 1.85463 1.56210 1.43629 1.05322 1.05770 1.60615 1.22240 0.82525 1.00446 1.01792 1.19288 1.15088 0.81289 1.27798 0.87017 1.25431 0.97677 0.94751 0.97301 1.69671 1.42541 0.98254 1.38832 0.86805 0.80323 0.78567 0.82236 1.19969 1.21607 1.18821 1.68127 1.11489 1.25369 1.09088 1.23002 1.00416 0.87302 1.03960 0.88187 0.92387 0.92412 0.83972 0.82982 0.91051 0.91939 0.92723 0.91258 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.65 10.50 -18.91 -0.20 -3.85 16 3 C 0.07 0.95 6.72 -38.84 -0.26 0.69 16 4 C -0.11 -1.61 10.11 -39.19 -0.40 -2.01 16 5 C -0.08 -1.44 9.62 -39.07 -0.38 -1.82 16 6 C 0.07 1.49 6.66 -83.03 -0.55 0.93 16 7 C 0.49 12.45 7.60 -12.36 -0.09 12.36 16 8 O -0.57 -16.05 16.16 5.28 0.09 -15.96 16 9 N -0.44 -11.33 2.69 -123.31 -0.33 -11.66 16 10 C 0.07 1.61 6.73 59.85 0.40 2.01 16 11 C -0.31 -8.94 9.49 -15.02 -0.14 -9.08 16 12 H 0.11 3.60 7.86 -52.49 -0.41 3.18 16 13 C 0.06 1.55 5.28 -17.45 -0.09 1.46 16 14 N -0.86 -24.81 13.95 55.50 0.77 -24.04 16 15 Si 0.89 21.16 24.46 -169.99 -4.16 17.00 16 16 H -0.27 -5.98 6.58 56.52 0.37 -5.61 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.26 -6.31 6.85 56.52 0.39 -5.92 16 19 N -0.43 -7.83 5.99 -9.69 -0.06 -7.88 16 20 C 0.01 0.19 10.21 -17.37 -0.18 0.01 16 21 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 23 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 24 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 25 H 0.15 2.52 7.64 -52.49 -0.40 2.11 16 26 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 27 H 0.06 1.40 3.97 -51.93 -0.21 1.19 16 28 H 0.05 1.14 6.77 -51.93 -0.35 0.79 16 29 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.16 1.71 6.31 -52.49 -0.33 1.38 16 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -33.11 255.78 -3.61 -36.72 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.88 Total: 0.09 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.70 Total: 5.73 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.38 Total: -43.59 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.11 Total: -19.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.16 Total: 17.00 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.11 -3.61 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362700243.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.260 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds