Wall clock time and date at job start Mon Mar 30 2020 17:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35736 * 116.99810 * 2 1 4 4 C 1.39254 * 120.37352 * 179.97438 * 3 2 1 5 5 C 1.38284 * 118.45569 * 180.02562 * 4 3 2 6 6 C 1.39558 * 119.12853 * 359.97438 * 5 4 3 7 7 C 1.47775 * 119.66768 * 179.97438 * 6 5 4 8 8 O 1.21596 * 119.99950 * 357.22219 * 7 6 5 9 9 N 1.34779 * 120.00035 * 177.21504 * 7 6 5 10 10 C 1.46497 * 120.00168 * 355.06368 * 9 7 6 11 11 C 1.36818 * 119.99931 * 174.77982 * 9 7 6 12 12 H 1.08000 * 120.00383 * 327.41666 * 11 9 7 13 13 C 1.39076 * 120.00264 * 147.41246 * 11 9 7 14 14 N 1.31339 * 120.00399 * 163.08873 * 13 11 9 15 15 Si 1.86808 * 119.99575 * 343.09689 * 13 11 9 16 16 H 1.48501 * 109.47376 * 91.27443 * 15 13 11 17 17 H 1.48500 * 109.46726 * 211.27597 * 15 13 11 18 18 H 1.48503 * 109.46811 * 331.27163 * 15 13 11 19 19 N 1.32859 * 120.66443 * 0.25503 * 6 5 4 20 20 C 1.31389 * 121.68651 * 359.47957 * 19 6 5 21 21 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47708 * 300.00808 * 1 2 3 23 23 H 1.09006 * 109.47015 * 60.00668 * 1 2 3 24 24 H 1.08008 * 120.76912 * 359.97438 * 4 3 2 25 25 H 1.08002 * 120.43707 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.46960 * 63.10875 * 10 9 7 27 27 H 1.08995 * 109.47228 * 183.10967 * 10 9 7 28 28 H 1.08998 * 109.46841 * 303.11131 * 10 9 7 29 29 H 0.97002 * 119.99938 * 180.02562 * 14 13 11 30 30 H 1.07997 * 119.59624 * 180.26781 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4353 1.2914 0.0005 5 6 4.0215 2.5439 0.0011 6 6 3.2053 3.6759 0.0005 7 6 3.8191 5.0202 0.0016 8 8 5.0283 5.1363 0.0541 9 7 3.0385 6.1174 -0.0556 10 6 1.5904 5.9781 -0.2279 11 6 3.5979 7.3613 0.0529 12 1 4.4717 7.5085 0.6704 13 6 3.0414 8.4363 -0.6318 14 7 3.3494 9.6654 -0.2864 15 14 1.8557 8.1319 -2.0429 16 1 0.4652 8.0985 -1.5227 17 1 1.9845 9.2231 -3.0418 18 1 2.1750 6.8319 -2.6860 19 7 1.8820 3.5572 0.0045 20 6 1.2945 2.3820 -0.0010 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 4.0415 0.3975 0.0014 25 1 5.0968 2.6447 0.0011 26 1 1.1712 5.4534 0.6307 27 1 1.1371 6.9662 -0.3067 28 1 1.3855 5.4109 -1.1359 29 1 2.9609 10.4152 -0.7638 30 1 0.2161 2.3248 -0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362700243.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:05 Heat of formation + Delta-G solvation = -27.501158 kcal Electronic energy + Delta-G solvation = -16457.330540 eV Core-core repulsion = 13639.706605 eV Total energy + Delta-G solvation = -2817.623935 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.86730 -40.38770 -38.75072 -36.90251 -34.29750 -33.42049 -31.64198 -28.60635 -28.13944 -27.22569 -24.91852 -23.94035 -21.44457 -19.32832 -19.03230 -18.46144 -17.89076 -17.38941 -16.87983 -16.29031 -16.09828 -15.56468 -15.04617 -14.76699 -14.55204 -14.46922 -14.14332 -13.94634 -13.83125 -13.31688 -12.75901 -12.61082 -12.34958 -12.18518 -11.80550 -11.19571 -10.92471 -10.82005 -10.17915 -9.82655 -9.48784 -8.57583 -6.17631 -0.27406 0.19030 1.19281 1.30487 1.43212 1.87506 2.13744 2.17518 2.59845 2.75245 3.04820 3.28876 3.55875 3.79109 3.99191 4.22837 4.38169 4.41891 4.45455 4.60067 4.69851 4.78620 4.83563 4.98203 4.99931 5.35650 5.48941 5.93743 6.17559 6.42931 6.72028 6.87006 7.18724 7.76053 8.58659 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.007157 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.345277 B = 3911.248483 C = 4430.488909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.315 6.315 3 C 0.098 3.902 4 C -0.111 4.111 5 C -0.082 4.082 6 C 0.034 3.966 7 C 0.491 3.509 8 O -0.616 6.616 9 N -0.455 5.455 10 C 0.080 3.920 11 C -0.338 4.338 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.903 5.903 15 Si 0.961 3.039 16 H -0.235 1.235 17 H -0.284 1.284 18 H -0.266 1.266 19 N -0.438 5.438 20 C 0.016 3.984 21 H 0.126 0.874 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.175 0.825 25 H 0.147 0.853 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.285 0.715 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -19.787 -1.817 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.226 6.226 3 C 0.049 3.951 4 C -0.137 4.137 5 C -0.103 4.103 6 C -0.103 4.103 7 C 0.282 3.718 8 O -0.502 6.502 9 N -0.173 5.173 10 C -0.062 4.062 11 C -0.466 4.466 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.541 5.541 15 Si 0.784 3.216 16 H -0.159 1.159 17 H -0.210 1.210 18 H -0.191 1.191 19 N -0.151 5.151 20 C -0.146 4.146 21 H 0.144 0.856 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.193 0.807 25 H 0.164 0.836 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.782 -18.916 -1.793 22.357 hybrid contribution 0.421 0.017 -0.327 0.533 sum -11.362 -18.899 -2.119 22.153 Atomic orbital electron populations 1.23535 0.75572 1.06385 1.02962 1.86048 1.24117 1.24894 1.87549 1.20321 0.93219 0.86292 0.95285 1.21094 0.92324 0.98224 1.02039 1.21937 1.01965 0.90965 0.95467 1.20885 0.90219 0.93611 1.05608 1.18344 0.86117 0.84349 0.83040 1.90593 1.15410 1.86849 1.57344 1.43701 1.07038 1.04712 1.61881 1.22322 0.79977 1.00588 1.03314 1.18871 1.14823 0.83805 1.29086 0.92871 1.26225 0.99733 0.93868 0.99318 1.69774 1.44610 0.99325 1.40347 0.85744 0.79608 0.78139 0.78104 1.15933 1.21033 1.19099 1.67921 1.10328 1.27658 1.09211 1.23599 1.02185 0.86208 1.02581 0.85555 0.91077 0.91052 0.80711 0.83555 0.89243 0.92369 0.91181 0.90551 0.78606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.20 16 2 O -0.31 -5.55 10.50 -90.60 -0.95 -6.50 16 3 C 0.10 2.21 6.72 22.75 0.15 2.37 16 4 C -0.11 -2.73 10.11 22.53 0.23 -2.50 16 5 C -0.08 -2.72 9.62 22.60 0.22 -2.50 16 6 C 0.03 1.35 6.66 41.83 0.28 1.63 16 7 C 0.49 25.86 7.60 86.77 0.66 26.52 16 8 O -0.62 -36.88 16.16 -4.02 -0.06 -36.94 16 9 N -0.45 -24.47 2.69 -662.30 -1.78 -26.25 16 10 C 0.08 3.43 6.73 127.77 0.86 4.29 16 11 C -0.34 -20.98 9.49 84.12 0.80 -20.18 16 12 H 0.05 3.80 7.86 -2.91 -0.02 3.77 16 13 C 0.01 0.68 5.28 84.97 0.45 1.12 16 14 N -0.90 -54.66 13.95 21.68 0.30 -54.36 16 15 Si 0.96 43.62 24.46 68.60 1.68 45.30 16 16 H -0.23 -9.22 6.58 99.48 0.65 -8.57 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.12 6.85 99.48 0.68 -11.44 16 19 N -0.44 -14.93 5.99 -184.56 -1.11 -16.04 16 20 C 0.02 0.38 10.21 85.00 0.87 1.25 16 21 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 22 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 23 H 0.07 0.51 7.67 -2.38 -0.02 0.49 16 24 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 25 H 0.15 4.91 7.64 -2.91 -0.02 4.89 16 26 H 0.09 3.45 6.85 -2.38 -0.02 3.43 16 27 H 0.06 2.51 3.97 -2.39 -0.01 2.50 16 28 H 0.07 2.76 6.77 -2.39 -0.02 2.75 16 29 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.20 3.09 6.31 -2.91 -0.02 3.07 16 Total: -1.00 -78.33 255.78 4.79 -73.55 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.09 Total: 8.05 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.62 Total: 13.19 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -2.59 Total: -96.65 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.02 Total: -43.44 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.68 Total: 45.30 kcal Total: -78.33 4.79 -73.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362700243.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.044 kcal (2) G-P(sol) polarization free energy of solvation -78.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds