Wall clock time and date at job start Mon Mar 30 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 S 1.81400 * 109.47312 * 270.02076 * 7 6 5 9 9 C 1.81406 * 103.00033 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46851 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00478 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99801 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99878 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00164 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47163 * 59.99651 * 14 12 10 16 16 H 1.48497 * 109.46990 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46676 * 299.99833 * 14 12 10 18 18 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 19 19 C 1.38230 * 119.99880 * 359.95582 * 18 6 5 20 20 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 25 25 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 26 26 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 27 27 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 28 28 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 29 29 H 1.09008 * 109.46653 * 300.00426 * 9 8 7 30 30 H 1.08998 * 109.46983 * 59.99737 * 9 8 7 31 31 H 0.97001 * 119.99944 * 179.97438 * 13 12 10 32 32 H 1.08008 * 119.99983 * 179.97438 * 18 6 5 33 33 H 1.08007 * 119.99843 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 16 5.2707 5.4480 0.0001 9 6 5.6787 7.2156 -0.0006 10 6 7.1761 7.3854 -0.0013 11 1 7.8181 6.5170 -0.0009 12 6 7.7266 8.6495 -0.0014 13 7 6.9448 9.7071 -0.0014 14 14 9.5826 8.8601 -0.0015 15 1 10.1533 8.2202 -1.2139 16 1 9.9166 10.3071 -0.0022 17 1 10.1533 8.2204 1.2110 18 6 2.7240 3.3755 1.1972 19 6 2.2628 2.0724 1.1971 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 2.0927 1.5598 -2.1325 26 1 2.9047 3.8844 -2.1324 27 1 3.0933 5.9619 -0.8899 28 1 3.0934 5.9618 0.8901 29 1 5.2597 7.6848 -0.8909 30 1 5.2597 7.6855 0.8891 31 1 7.3320 10.5965 -0.0011 32 1 2.9041 3.8846 2.1326 33 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009899.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:14 Heat of formation + Delta-G solvation = -6.757372 kcal Electronic energy + Delta-G solvation = -13392.701829 eV Core-core repulsion = 11122.270626 eV Total energy + Delta-G solvation = -2270.431203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35748 -34.70441 -33.13299 -30.96961 -30.79658 -28.52709 -26.62588 -23.37514 -22.69044 -22.59772 -20.46071 -16.63587 -16.03141 -15.60417 -15.28000 -14.97482 -14.54189 -13.87767 -13.83934 -13.32129 -12.99238 -12.92076 -12.73852 -12.41881 -11.89614 -11.87062 -11.68642 -11.26683 -10.90119 -10.84992 -10.75564 -10.66764 -10.09251 -9.58668 -8.86169 -8.77953 -8.60016 -8.24756 -6.66572 -6.18286 -4.22518 1.32953 1.55496 2.77947 3.29075 3.31894 3.36560 3.88272 3.99999 4.36671 4.69914 4.79668 5.04437 5.06762 5.12720 5.18627 5.23198 5.42948 5.45257 5.60097 5.70532 5.73805 5.89643 5.92228 6.01353 6.20036 6.21403 6.54340 6.69367 6.80574 7.10836 7.12167 7.13657 7.76092 8.02680 8.79160 9.40356 10.93000 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.071062 B = 0.004009 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.927562 B = 6982.842700 C = 7056.379894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.058 4.058 7 C -0.055 4.055 8 S -0.297 6.297 9 C 0.088 3.912 10 C -0.512 4.512 11 H 0.067 0.933 12 C 0.065 3.935 13 N -0.894 5.894 14 Si 0.907 3.093 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.102 4.102 19 C -0.119 4.119 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.123 0.877 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -14.965 0.005 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.122 4.122 6 C -0.059 4.059 7 C -0.202 4.202 8 S -0.068 6.068 9 C -0.058 4.058 10 C -0.551 4.551 11 H 0.085 0.915 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.734 3.266 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.122 4.122 19 C -0.137 4.137 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.372 -15.582 0.005 19.290 hybrid contribution 0.187 1.409 0.000 1.422 sum -11.185 -14.172 0.005 18.055 Atomic orbital electron populations 1.21748 0.94956 1.01404 1.02219 1.20509 0.95972 0.92926 1.02635 1.19830 0.99971 0.96080 0.93314 1.20936 1.00620 0.94780 0.97346 1.21030 0.98744 0.94702 0.97706 1.19398 0.98056 0.94890 0.93535 1.22203 0.97727 0.95479 1.04793 1.86855 1.01704 1.20259 1.98003 1.21065 1.00480 0.84282 1.00014 1.20648 0.89523 0.92687 1.52285 0.91534 1.24969 0.98914 0.95330 0.94660 1.69948 1.35359 0.98214 1.49693 0.86405 0.84206 0.77026 0.78982 1.19895 1.21056 1.19889 1.21033 0.98720 0.94724 0.97706 1.20934 1.00606 0.94799 0.97346 0.92599 0.92592 0.92639 0.91220 0.91220 0.86345 0.85915 0.90078 0.90081 0.94666 0.94665 0.92457 0.85914 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.09 -1.08 5.13 -104.63 -0.54 -1.62 16 4 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 5 C -0.10 -1.47 9.70 -39.59 -0.38 -1.85 16 6 C -0.06 -0.91 5.14 -104.62 -0.54 -1.45 16 7 C -0.05 -0.97 6.07 36.01 0.22 -0.75 16 8 S -0.30 -6.66 21.64 -107.50 -2.33 -8.99 16 9 C 0.09 2.34 5.70 36.01 0.21 2.54 16 10 C -0.51 -14.69 9.13 -34.44 -0.31 -15.01 16 11 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 19 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 28 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 29 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -29.98 298.48 -9.54 -39.51 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.02 Total: -2.39 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.40 Total: -23.68 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -2.33 Total: -8.99 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.98 -9.54 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009899.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds