Wall clock time and date at job start Mon Mar 30 2020 17:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 S 1.81402 * 109.47207 * 180.02562 * 7 6 5 9 9 C 1.81400 * 102.99965 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46991 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00167 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00053 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00378 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00099 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47113 * 89.99980 * 14 12 10 16 16 H 1.48497 * 109.47465 * 209.99936 * 14 12 10 17 17 H 1.48503 * 109.47099 * 330.00474 * 14 12 10 18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4 20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 26 26 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 27 27 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 28 28 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 29 29 H 1.08999 * 109.47366 * 299.99585 * 9 8 7 30 30 H 1.08998 * 109.47769 * 60.00051 * 9 8 7 31 31 H 0.96998 * 120.00625 * 179.97438 * 13 12 10 32 32 H 1.07999 * 119.99934 * 180.25938 * 18 5 4 33 33 H 1.08001 * 120.00294 * 179.76453 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 16 8.1081 -0.0020 1.4235 9 6 8.5229 -0.0062 3.1895 10 6 10.0209 -0.0066 3.3536 11 1 10.6596 -0.0050 2.4827 12 6 10.5762 -0.0091 4.6156 13 7 11.8835 -0.0100 4.7589 14 14 9.4716 -0.0112 6.1220 15 1 9.1781 -1.4118 6.5188 16 1 10.1569 0.6865 7.2394 17 1 8.2013 0.6900 5.8054 18 6 3.5805 -1.1972 0.0010 19 6 2.1982 -1.1972 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1324 -0.0004 24 1 4.1205 2.1325 0.0001 25 1 6.1400 -0.8891 -0.5270 26 1 6.1401 0.8909 -0.5236 27 1 5.9328 0.8863 1.9473 28 1 5.9327 -0.8937 1.9440 29 1 8.1055 0.8825 3.6629 30 1 8.1061 -0.8975 3.6586 31 1 12.2741 -0.0114 5.6468 32 1 4.1205 -2.1325 0.0013 33 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:22 Heat of formation + Delta-G solvation = -2.650692 kcal Electronic energy + Delta-G solvation = -13355.374237 eV Core-core repulsion = 11085.121113 eV Total energy + Delta-G solvation = -2270.253124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54199 -34.75335 -33.03332 -31.08031 -31.00127 -29.34742 -26.78040 -23.40845 -22.79608 -22.19182 -20.56879 -16.91054 -16.27818 -15.72298 -15.49026 -15.11127 -14.17785 -14.11389 -13.97345 -13.50358 -13.48112 -12.88937 -12.69294 -12.62660 -12.38560 -12.12260 -11.70014 -11.28759 -11.20307 -10.88935 -10.75412 -10.35860 -9.99828 -9.63384 -9.00160 -8.96346 -8.71213 -8.54464 -6.80636 -6.17748 -4.19706 1.22924 1.32759 2.53508 3.21331 3.28819 3.30130 3.66100 3.70139 4.31193 4.69246 4.70050 4.92493 4.97212 5.03251 5.13468 5.27935 5.32238 5.35723 5.42295 5.58502 5.58631 5.76141 5.85808 6.01737 6.06213 6.22617 6.34242 6.48453 6.59233 6.62370 6.70290 6.94167 7.43273 8.30955 8.85285 9.38123 10.94425 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.043284 B = 0.004258 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.732094 B = 6574.893449 C = 6901.235928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.077 4.077 6 C -0.062 4.062 7 C -0.090 4.090 8 S -0.275 6.275 9 C 0.049 3.951 10 C -0.514 4.514 11 H 0.084 0.916 12 C 0.079 3.921 13 N -0.892 5.892 14 Si 0.878 3.122 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.266 1.266 18 C -0.112 4.112 19 C -0.120 4.120 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.268 0.732 32 H 0.123 0.877 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.595 0.032 -8.717 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.100 4.100 7 C -0.238 4.238 8 S -0.048 6.048 9 C -0.099 4.099 10 C -0.552 4.552 11 H 0.102 0.898 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.705 3.295 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.130 4.130 19 C -0.138 4.138 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.137 0.863 24 H 0.141 0.859 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.747 0.036 -9.438 22.792 hybrid contribution -1.228 -0.020 2.025 2.369 sum -21.975 0.015 -7.412 23.191 Atomic orbital electron populations 1.20770 0.91436 1.02621 1.02109 1.19901 0.95929 0.93325 1.00548 1.21006 0.94173 0.97422 1.01241 1.21097 0.94079 0.97832 0.99964 1.19936 0.95582 0.93189 0.99191 1.20320 0.89977 1.04072 0.95654 1.23276 0.97216 1.04197 0.99153 1.86700 1.02337 1.97964 1.17769 1.21391 1.01768 0.98991 0.87736 1.20501 0.87604 1.52473 0.94667 0.89811 1.24860 0.94980 0.94180 0.98500 1.69865 1.09882 1.49682 1.23530 0.86808 0.81114 0.78810 0.82811 1.19882 1.20767 1.19123 1.21097 0.94078 0.97831 0.99967 1.21008 0.94173 0.97421 1.01242 0.91373 0.91690 0.91691 0.86252 0.85900 0.90157 0.90159 0.90919 0.90916 0.94782 0.95240 0.92230 0.85900 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.10 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.08 -0.96 5.13 -104.63 -0.54 -1.50 16 6 C -0.06 -0.84 5.35 -27.89 -0.15 -0.99 16 7 C -0.09 -1.47 5.92 37.16 0.22 -1.25 16 8 S -0.28 -5.87 21.66 -107.50 -2.33 -8.20 16 9 C 0.05 1.21 4.77 36.01 0.17 1.38 16 10 C -0.51 -14.91 9.68 -34.44 -0.33 -15.24 16 11 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 12 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 13 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 14 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 18 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 19 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 20 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 22 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 23 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 24 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 26 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 27 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 28 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.03 0.83 7.20 -51.92 -0.37 0.46 16 30 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 31 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -30.73 294.90 -9.29 -40.02 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.99 Total: -2.27 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -2.52 Total: -24.12 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.77 Total: -26.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -2.33 Total: -8.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.73 -9.29 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.365 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds