Wall clock time and date at job start Mon Mar 30 2020 17:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46710 * 2 1 4 4 C 1.38254 * 120.00295 * 269.90917 * 3 2 1 5 5 C 1.38204 * 119.99840 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00497 * 0.09078 * 5 4 3 7 7 C 1.38207 * 119.99568 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99822 * 179.97438 * 7 6 5 9 9 S 1.81398 * 109.47126 * 269.97520 * 8 7 6 10 10 C 1.81394 * 103.00163 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47210 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00237 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00233 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99696 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46846 * 90.00215 * 15 13 11 17 17 H 1.48500 * 109.47115 * 210.00019 * 15 13 11 18 18 H 1.48503 * 109.47308 * 330.00217 * 15 13 11 19 19 C 1.38220 * 119.99654 * 90.00415 * 3 2 1 20 20 H 1.09002 * 109.46695 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47031 * 299.99687 * 1 2 3 22 22 H 1.08996 * 109.47256 * 60.00117 * 1 2 3 23 23 H 1.08997 * 109.47031 * 240.00313 * 2 1 3 24 24 H 1.08996 * 109.47256 * 119.99883 * 2 1 3 25 25 H 1.07997 * 119.99709 * 0.04961 * 4 3 2 26 26 H 1.08000 * 119.99746 * 180.02562 * 5 4 3 27 27 H 1.07991 * 120.00010 * 179.97438 * 6 5 4 28 28 H 1.08993 * 109.47341 * 29.98219 * 8 7 6 29 29 H 1.09001 * 109.46864 * 149.98303 * 8 7 6 30 30 H 1.09001 * 109.47666 * 300.00399 * 10 9 8 31 31 H 1.09006 * 109.46709 * 60.00388 * 10 9 8 32 32 H 0.96998 * 119.99883 * 180.02562 * 14 13 11 33 33 H 1.08000 * 119.99660 * 0.27001 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2645 2.0721 -1.1973 5 6 2.7246 3.3753 -1.1972 6 6 2.9545 4.0273 0.0002 7 6 2.7236 3.3758 1.1971 8 6 2.9747 4.0862 2.5022 9 16 4.6875 3.8001 3.0266 10 6 4.7954 4.7186 4.5871 11 6 6.1828 4.5773 5.1583 12 1 6.9256 3.9937 4.6346 13 6 6.5040 5.1932 6.3494 14 7 5.5994 5.9035 6.9872 15 14 8.2235 5.0175 7.0577 16 1 9.0843 6.1137 6.5453 17 1 8.1584 5.0907 8.5394 18 1 8.7949 3.7084 6.6514 19 6 2.2627 2.0724 1.1971 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.0852 1.5627 -2.1326 26 1 2.9055 3.8841 -2.1325 27 1 3.3144 5.0455 0.0002 28 1 2.8084 5.1555 2.3718 29 1 2.2934 3.7025 3.2616 30 1 4.5838 5.7721 4.4041 31 1 4.0685 4.3195 5.2946 32 1 5.8255 6.3370 7.8250 33 1 2.0869 1.5617 2.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:32 Heat of formation + Delta-G solvation = -6.751057 kcal Electronic energy + Delta-G solvation = -13480.071398 eV Core-core repulsion = 11209.640469 eV Total energy + Delta-G solvation = -2270.430929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35859 -34.46977 -33.13533 -32.16738 -29.45471 -28.53799 -26.78134 -23.93396 -23.07325 -21.83505 -20.23098 -16.63356 -16.27543 -15.56577 -15.33513 -14.88985 -14.55583 -13.95368 -13.79662 -13.27655 -12.94792 -12.77036 -12.66519 -12.35409 -12.00154 -11.84783 -11.68764 -11.29158 -10.91270 -10.87369 -10.71954 -10.63216 -10.11559 -9.57484 -8.87306 -8.62940 -8.60317 -8.34659 -6.66750 -6.18591 -4.22673 1.35971 1.52360 2.78494 3.26947 3.32435 3.38207 3.87993 3.99946 4.36550 4.72035 4.80911 4.98955 5.13344 5.18490 5.24994 5.27992 5.38615 5.51312 5.61239 5.68614 5.81705 5.85117 5.94275 6.06227 6.20853 6.23196 6.58496 6.68952 6.80021 7.10577 7.12036 7.13876 7.76062 8.02447 8.79247 9.40264 10.92757 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.045111 B = 0.004422 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.540583 B = 6330.374778 C = 6510.853607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.125 4.125 5 C -0.118 4.118 6 C -0.110 4.110 7 C -0.051 4.051 8 C -0.055 4.055 9 S -0.296 6.296 10 C 0.087 3.913 11 C -0.511 4.511 12 H 0.067 0.933 13 C 0.065 3.935 14 N -0.894 5.894 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.102 4.102 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -7.432 -13.861 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.144 4.144 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.203 4.203 9 S -0.067 6.067 10 C -0.059 4.059 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.733 3.267 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.122 4.122 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.638 -7.896 -14.159 18.370 hybrid contribution -0.031 0.817 1.129 1.394 sum -8.669 -7.079 -13.030 17.177 Atomic orbital electron populations 1.21745 0.94919 1.01465 1.02179 1.20525 0.95997 0.92830 1.02793 1.19818 0.99528 0.96086 0.93076 1.20935 1.01115 0.95082 0.97222 1.21049 0.99912 0.94958 0.97736 1.21036 0.99822 1.00322 0.91774 1.19388 0.97735 0.94309 0.93747 1.22208 0.99204 1.02270 0.96580 1.86855 1.12327 1.72841 1.34679 1.21074 1.01255 0.95874 0.87723 1.20687 0.95400 1.32609 1.06370 0.91486 1.24969 0.97958 0.94700 0.96252 1.69956 1.33919 1.32556 1.16761 0.86350 0.83456 0.78843 0.78010 1.20340 1.20969 1.19529 1.20910 0.99601 0.93996 0.97701 0.92583 0.92488 0.92713 0.91232 0.90947 0.86544 0.86249 0.85970 0.90037 0.90079 0.94655 0.94644 0.92517 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.08 -0.84 6.07 -27.88 -0.17 -1.00 16 3 C -0.09 -1.07 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.48 9.70 -39.59 -0.38 -1.87 16 5 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 6 C -0.11 -1.58 9.70 -39.58 -0.38 -1.97 16 7 C -0.05 -0.80 5.14 -104.63 -0.54 -1.34 16 8 C -0.06 -0.98 6.07 36.01 0.22 -0.76 16 9 S -0.30 -6.63 21.64 -107.50 -2.33 -8.96 16 10 C 0.09 2.32 5.70 36.00 0.21 2.52 16 11 C -0.51 -14.65 9.13 -34.44 -0.31 -14.97 16 12 H 0.07 1.93 7.71 -52.48 -0.40 1.52 16 13 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 15 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.10 -1.48 9.36 -39.58 -0.37 -1.86 16 20 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 24 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 29 H 0.08 1.38 8.09 -51.92 -0.42 0.96 16 30 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -29.95 298.48 -9.54 -39.49 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.02 Total: -2.22 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.40 Total: -23.87 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -2.33 Total: -8.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.95 -9.54 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.738 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds