Wall clock time and date at job start Mon Mar 30 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31665 * 119.68388 * 2 1 4 4 C 1.32412 * 121.79867 * 179.97438 * 3 2 1 5 5 O 1.35492 * 119.52729 * 179.97438 * 4 3 2 6 6 C 1.39166 * 120.94779 * 359.97438 * 4 3 2 7 7 C 1.37963 * 119.26544 * 0.06289 * 6 4 3 8 8 C 1.39523 * 119.68979 * 180.02562 * 2 1 3 9 9 C 1.47617 * 120.49476 * 359.73108 * 8 2 1 10 10 O 1.21579 * 120.00126 * 353.99578 * 9 8 2 11 11 N 1.34780 * 119.99885 * 174.00037 * 9 8 2 12 12 C 1.46504 * 119.99670 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47032 * 180.02562 * 12 11 9 14 14 H 1.08010 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99689 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00192 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47268 * 60.00068 * 17 15 13 19 19 H 1.48505 * 109.47378 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47331 * 300.00125 * 17 15 13 21 21 H 1.09001 * 109.47438 * 263.43965 * 1 2 3 22 22 H 1.08999 * 109.47288 * 23.44083 * 1 2 3 23 23 H 1.09002 * 109.46702 * 143.43752 * 1 2 3 24 24 H 0.96708 * 114.00303 * 90.00052 * 5 4 3 25 25 H 1.08001 * 120.37374 * 180.02562 * 6 4 3 26 26 H 1.07997 * 120.82018 * 179.97438 * 7 6 4 27 27 H 0.96993 * 119.99818 * 0.02562 * 11 9 8 28 28 H 1.09001 * 109.47110 * 299.99541 * 12 11 9 29 29 H 1.09001 * 109.47360 * 59.99672 * 12 11 9 30 30 H 0.97006 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1439 0.0000 4 6 3.4822 1.1927 0.0005 5 8 4.1060 2.3955 0.0000 6 6 4.2414 0.0264 0.0016 7 6 3.6007 -1.1954 0.0008 8 6 2.1980 -1.2121 -0.0005 9 6 1.4641 -2.4928 0.0049 10 8 0.2538 -2.4994 0.1199 11 7 2.1357 -3.6549 -0.1177 12 6 1.4073 -4.9260 -0.1118 13 6 2.3830 -6.0648 -0.2616 14 1 3.4399 -5.8619 -0.3526 15 6 1.9263 -7.3655 -0.2836 16 7 0.6393 -7.6125 -0.1733 17 14 3.1356 -8.7769 -0.4700 18 1 4.1004 -8.7545 0.6586 19 1 2.3973 -10.0654 -0.4639 20 1 3.8705 -8.6330 -1.7524 21 1 -0.3634 -0.1174 1.0209 22 1 -0.3634 0.9428 -0.4088 23 1 -0.3633 -0.8255 -0.6122 24 1 4.2868 2.7453 0.8832 25 1 5.3203 0.0771 0.0024 26 1 4.1651 -2.1162 0.0012 27 1 3.1013 -3.6496 -0.2091 28 1 0.8682 -5.0315 0.8297 29 1 0.6988 -4.9427 -0.9400 30 1 0.3180 -8.5277 -0.1884 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427606543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:34 Heat of formation + Delta-G solvation = -72.890964 kcal Electronic energy + Delta-G solvation = -15894.189500 eV Core-core repulsion = 13074.597315 eV Total energy + Delta-G solvation = -2819.592185 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91252 -40.21415 -38.05916 -36.30840 -34.71038 -33.75301 -32.62457 -29.76011 -28.30463 -25.50643 -24.47401 -23.24886 -21.74078 -19.72405 -19.44594 -18.06078 -17.81682 -16.93854 -16.73794 -16.30789 -16.15250 -15.31637 -14.99117 -14.59829 -14.35985 -14.11414 -13.99836 -13.71790 -13.14674 -13.10868 -12.85777 -12.75648 -12.66389 -12.20986 -11.50402 -11.02202 -10.88153 -10.77979 -10.48499 -10.07132 -9.70602 -8.27744 -6.44273 -0.50241 0.08234 1.45327 1.48836 1.56960 1.78038 2.25678 2.43839 2.53602 2.69938 3.07754 3.48860 3.64781 3.72388 3.95925 4.24824 4.49309 4.64973 4.73719 4.86103 5.00575 5.11858 5.16031 5.25481 5.42549 5.51306 5.67023 5.84650 6.54805 6.64544 6.77221 6.84028 7.22694 7.39061 8.84094 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.041909 B = 0.005250 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.954062 B = 5331.685926 C = 5973.228701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.200 3.800 3 N -0.532 5.532 4 C 0.333 3.667 5 O -0.485 6.485 6 C -0.185 4.185 7 C -0.018 4.018 8 C -0.211 4.211 9 C 0.545 3.455 10 O -0.577 6.577 11 N -0.698 5.698 12 C 0.266 3.734 13 C -0.558 4.558 14 H 0.085 0.915 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.983 3.017 18 H -0.262 1.262 19 H -0.287 1.287 20 H -0.263 1.263 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.426 0.574 25 H 0.185 0.815 26 H 0.170 0.830 27 H 0.407 0.593 28 H -0.006 1.006 29 H -0.008 1.008 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 14.745 1.718 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.061 3.939 3 N -0.252 5.252 4 C 0.154 3.846 5 O -0.296 6.296 6 C -0.206 4.206 7 C -0.043 4.043 8 C -0.216 4.216 9 C 0.332 3.668 10 O -0.460 6.460 11 N -0.348 5.348 12 C 0.144 3.856 13 C -0.595 4.595 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.187 1.187 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.103 0.897 24 H 0.289 0.711 25 H 0.202 0.798 26 H 0.187 0.813 27 H 0.243 0.757 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.267 15.332 1.218 17.956 hybrid contribution 0.784 -1.469 0.383 1.708 sum 10.051 13.863 1.601 17.198 Atomic orbital electron populations 1.20976 0.87573 1.03581 1.04036 1.21226 0.97489 0.85759 0.89375 1.67089 1.11109 1.29822 1.17197 1.19673 0.86554 0.86623 0.91789 1.84672 1.76117 1.32611 1.36184 1.22310 1.03587 0.90339 1.04329 1.22020 0.91723 1.00371 0.90204 1.20765 0.95759 0.93723 1.11384 1.18431 0.87047 0.84366 0.76921 1.90685 1.15354 1.87734 1.52214 1.46091 1.11403 1.05800 1.71496 1.18618 0.92275 0.80074 0.94630 1.21577 0.94455 0.91084 1.52415 0.89688 1.26019 0.97264 1.02146 0.93932 1.70125 1.15447 1.21618 1.49635 0.85229 0.78059 0.76609 0.79460 1.18607 1.21266 1.18724 0.89927 0.90029 0.89686 0.71137 0.79760 0.81271 0.75660 0.98851 0.98961 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.25 8.86 71.24 0.63 -2.62 16 2 C 0.20 6.24 6.82 42.89 0.29 6.53 16 3 N -0.53 -15.16 10.29 -295.91 -3.04 -18.20 16 4 C 0.33 7.45 7.74 84.83 0.66 8.11 16 5 O -0.48 -8.23 13.55 -87.92 -1.19 -9.42 16 6 C -0.19 -3.39 10.02 22.43 0.22 -3.17 16 7 C -0.02 -0.40 9.62 22.70 0.22 -0.18 16 8 C -0.21 -6.62 5.89 -20.00 -0.12 -6.74 16 9 C 0.54 22.00 7.70 86.72 0.67 22.67 16 10 O -0.58 -27.44 13.36 -3.96 -0.05 -27.50 16 11 N -0.70 -28.79 5.50 -469.91 -2.59 -31.37 16 12 C 0.27 14.20 5.43 85.63 0.46 14.67 16 13 C -0.56 -29.36 9.28 25.60 0.24 -29.13 16 14 H 0.09 3.99 7.60 -2.91 -0.02 3.96 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 17 Si 0.98 41.17 29.54 68.60 2.03 43.19 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.08 3.06 5.85 -2.39 -0.01 3.04 16 24 H 0.43 2.58 9.06 -74.05 -0.67 1.91 16 25 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.17 2.95 6.56 -2.91 -0.02 2.93 16 27 H 0.41 13.52 6.46 -92.71 -0.60 12.92 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -72.19 268.10 -0.90 -73.09 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -0.08 Total: 13.96 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 3.74 Total: 10.95 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -5.34 Total: -104.27 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.24 Total: -36.91 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -72.19 -0.90 -73.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427606543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.195 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds