Wall clock time and date at job start Mon Mar 30 2020 17:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35649 * 117.00141 * 2 1 4 4 C 1.39300 * 120.54500 * 0.29059 * 3 2 1 5 5 C 1.38340 * 118.44866 * 180.24503 * 4 3 2 6 6 C 1.50706 * 120.26905 * 179.76506 * 5 4 3 7 7 C 1.38746 * 119.46290 * 359.48285 * 5 4 3 8 8 N 1.31396 * 121.07119 * 0.25436 * 7 5 4 9 9 C 1.32905 * 121.68597 * 0.02562 * 8 7 5 10 10 C 1.47681 * 119.79530 * 179.97438 * 9 8 7 11 11 O 1.21599 * 120.00772 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99665 * 359.97438 * 10 9 8 13 13 C 1.36821 * 120.00116 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99999 * 359.97438 * 13 12 10 15 15 C 1.39072 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31346 * 120.00540 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.46883 * 90.00490 * 17 15 13 19 19 H 1.48507 * 109.46997 * 210.00469 * 17 15 13 20 20 H 1.48500 * 109.47205 * 330.00384 * 17 15 13 21 21 H 1.09001 * 109.46492 * 60.00333 * 1 2 3 22 22 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47459 * 300.00920 * 1 2 3 24 24 H 1.07998 * 120.77428 * 359.97438 * 4 3 2 25 25 H 1.09001 * 109.46953 * 269.71614 * 6 5 4 26 26 H 1.09000 * 109.47318 * 29.71212 * 6 5 4 27 27 H 1.09000 * 109.47161 * 149.71843 * 6 5 4 28 28 H 1.08003 * 119.47117 * 180.27983 * 7 5 4 29 29 H 0.97001 * 119.99736 * 0.02562 * 12 10 9 30 30 H 0.96996 * 120.00504 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2974 2.3841 0.0061 5 6 1.9701 3.5929 0.0006 6 6 1.2022 4.8896 0.0015 7 6 3.3575 3.6018 0.0003 8 7 4.0429 2.4807 0.0000 9 6 3.4420 1.2952 -0.0004 10 6 4.2535 0.0613 -0.0013 11 8 3.7078 -1.0254 -0.0012 12 7 5.5990 0.1396 -0.0021 13 6 6.3509 -1.0035 -0.0024 14 1 5.8661 -1.9687 -0.0015 15 6 7.7392 -0.9227 -0.0027 16 7 8.4610 -2.0201 -0.0035 17 14 8.5777 0.7466 -0.0036 18 1 8.8002 1.1894 1.3962 19 1 9.8832 0.6445 -0.7040 20 1 7.7161 1.7329 -0.7037 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 0.2179 2.3524 0.0105 25 1 1.0168 5.2028 -1.0259 26 1 0.2514 4.7485 0.5155 27 1 1.7830 5.6555 0.5156 28 1 3.8829 4.5454 0.0006 29 1 6.0343 1.0064 -0.0018 30 1 9.4294 -1.9637 -0.0041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488799856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:38 Heat of formation + Delta-G solvation = -34.545171 kcal Electronic energy + Delta-G solvation = -16311.243064 eV Core-core repulsion = 13493.313677 eV Total energy + Delta-G solvation = -2817.929387 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51261 -38.01986 -37.72506 -33.94226 -33.50805 -31.61889 -30.65909 -28.03949 -27.17844 -24.82869 -23.06971 -22.06822 -19.73605 -18.69896 -17.37030 -17.03734 -16.37627 -15.68634 -14.96463 -14.56305 -14.12745 -13.85571 -13.50099 -13.45347 -13.43111 -12.78330 -12.52892 -12.36800 -12.20563 -12.06372 -11.26482 -11.22321 -11.16167 -10.50428 -10.01513 -9.57432 -9.50555 -9.33163 -8.47253 -8.17287 -8.05183 -6.37981 -3.77590 1.01377 1.48342 3.11058 3.18713 3.20170 3.43746 3.52145 4.11882 4.39681 4.45497 4.66841 4.75991 4.98347 5.00264 5.14127 5.20341 5.32743 5.36888 5.43844 5.51786 5.57788 5.73344 5.94281 6.22139 6.29763 6.62316 7.48567 7.57285 8.09822 8.18079 8.62155 8.93835 9.43534 9.92761 10.73397 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.007727 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.604834 B = 3622.663535 C = 4544.821890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.265 6.265 3 C 0.125 3.875 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.107 4.107 7 C 0.057 3.943 8 N -0.436 5.436 9 C 0.076 3.924 10 C 0.485 3.515 11 O -0.561 6.561 12 N -0.556 5.556 13 C -0.294 4.294 14 H 0.124 0.876 15 C 0.043 3.957 16 N -0.866 5.866 17 Si 0.876 3.124 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.260 1.260 21 H 0.051 0.949 22 H 0.101 0.899 23 H 0.051 0.949 24 H 0.138 0.862 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.382 0.618 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 13.799 -0.011 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.174 6.174 3 C 0.073 3.927 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.164 4.164 7 C -0.103 4.103 8 N -0.148 5.148 9 C -0.064 4.064 10 C 0.271 3.729 11 O -0.444 6.444 12 N -0.193 5.193 13 C -0.423 4.423 14 H 0.142 0.858 15 C -0.162 4.162 16 N -0.505 5.505 17 Si 0.702 3.298 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.185 1.185 21 H 0.070 0.930 22 H 0.120 0.880 23 H 0.069 0.931 24 H 0.156 0.844 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.173 0.827 29 H 0.217 0.783 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.818 12.706 -0.011 18.048 hybrid contribution -0.390 1.434 -0.011 1.486 sum -13.208 14.140 -0.023 19.349 Atomic orbital electron populations 1.23136 0.79728 1.04157 1.00564 1.86517 1.19785 1.24492 1.86639 1.20025 0.92442 0.85308 0.94875 1.21481 1.00286 0.91437 1.07253 1.20772 0.95157 0.95390 0.99502 1.20707 0.99565 0.93678 1.02461 1.22504 0.90516 0.96429 1.00840 1.67754 1.39769 0.97534 1.09711 1.21291 0.88941 0.93076 1.03088 1.16964 0.82242 0.86681 0.86982 1.90696 1.70897 1.26950 1.55841 1.42125 1.05344 1.08899 1.62889 1.19593 0.88595 0.87715 1.46423 0.85850 1.25124 0.96054 0.97874 0.97117 1.69599 1.06606 1.27251 1.47004 0.86668 0.80076 0.83643 0.79447 1.19266 1.19971 1.18465 0.93048 0.88017 0.93051 0.84409 0.90910 0.91563 0.91050 0.82695 0.78314 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.83 101.05 0.99 1.23 16 2 O -0.27 -5.04 8.56 -40.60 -0.35 -5.39 16 3 C 0.12 2.32 6.71 -38.53 -0.26 2.07 16 4 C -0.18 -2.49 8.80 -39.15 -0.34 -2.84 16 5 C -0.11 -1.34 5.90 -104.39 -0.62 -1.96 16 6 C -0.11 -0.88 10.03 36.01 0.36 -0.52 16 7 C 0.06 0.85 10.85 -17.55 -0.19 0.66 16 8 N -0.44 -8.47 9.54 -9.72 -0.09 -8.56 16 9 C 0.08 1.65 6.76 -82.89 -0.56 1.09 16 10 C 0.48 12.77 7.75 -12.40 -0.10 12.67 16 11 O -0.56 -16.45 14.71 -16.67 -0.25 -16.69 16 12 N -0.56 -14.84 5.07 -11.89 -0.06 -14.90 16 13 C -0.29 -8.68 10.16 -15.02 -0.15 -8.84 16 14 H 0.12 4.06 7.38 -52.49 -0.39 3.68 16 15 C 0.04 1.22 5.50 -17.45 -0.10 1.13 16 16 N -0.87 -25.40 13.95 55.50 0.77 -24.63 16 17 Si 0.88 20.28 27.74 -169.99 -4.71 15.57 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.26 -5.75 6.52 56.52 0.37 -5.38 16 21 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 22 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 24 H 0.14 1.45 6.45 -52.49 -0.34 1.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.38 9.44 5.08 -40.82 -0.21 9.23 16 30 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -34.52 265.74 -4.65 -39.17 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.01 Total: 6.74 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.96 Total: 4.69 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.62 Total: -48.09 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.59 Total: -22.08 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.71 Total: 15.57 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.52 -4.65 -39.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488799856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.625 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds