Wall clock time and date at job start Mon Mar 30 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47452 * 2 1 4 4 O 1.42895 * 109.47059 * 239.99427 * 2 1 3 5 5 C 1.50706 * 109.47143 * 119.99768 * 2 1 3 6 6 O 1.21272 * 119.99908 * 115.00029 * 5 2 1 7 7 N 1.34775 * 119.99714 * 294.99454 * 5 2 1 8 8 C 1.39474 * 119.99654 * 185.14023 * 7 5 2 9 9 C 1.38597 * 119.57767 * 174.86850 * 8 7 5 10 10 C 1.40808 * 118.79695 * 180.02562 * 9 8 7 11 11 C 1.41544 * 120.99664 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00177 * 330.78966 * 11 10 9 13 13 C 1.40029 * 119.99834 * 150.79227 * 11 10 9 14 14 N 1.30747 * 120.00060 * 164.05515 * 13 11 10 15 15 Si 1.86801 * 120.00304 * 344.05693 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.12050 * 15 13 11 17 17 H 1.48500 * 109.47538 * 210.12188 * 15 13 11 18 18 H 1.48500 * 109.47092 * 330.12163 * 15 13 11 19 19 C 1.41170 * 118.00461 * 359.97438 * 10 9 8 20 20 C 1.37587 * 119.02040 * 0.02562 * 19 10 9 21 21 N 1.32088 * 121.10350 * 359.97319 * 20 19 10 22 22 H 1.09007 * 109.46952 * 300.00138 * 1 2 3 23 23 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 24 24 H 1.08999 * 109.47313 * 180.02562 * 1 2 3 25 25 H 0.96701 * 114.00467 * 300.00425 * 4 2 1 26 26 H 0.96997 * 120.00483 * 5.14634 * 7 5 2 27 27 H 1.08001 * 120.60425 * 0.02562 * 9 8 7 28 28 H 0.96998 * 119.99741 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.49336 * 179.97438 * 19 10 9 30 30 H 1.07997 * 119.45323 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 8 2.6529 -1.7466 1.1216 7 7 1.7920 -0.1940 2.4520 8 6 2.3470 -0.7918 3.5833 9 6 2.1833 -0.1939 4.8230 10 6 2.7510 -0.8113 5.9540 11 6 2.6128 -0.2410 7.2421 12 1 2.5131 0.8289 7.3511 13 6 2.6056 -1.0639 8.3750 14 7 2.7919 -0.5455 9.5608 15 14 2.3296 -2.9024 8.1924 16 1 3.6370 -3.5839 8.0148 17 1 1.6599 -3.4259 9.4100 18 1 1.4727 -3.1589 7.0070 19 6 3.4620 -2.0161 5.7648 20 6 3.5715 -2.5341 4.4948 21 7 3.0239 -1.9236 3.4594 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.7209 -1.5953 -1.2328 26 1 1.2329 0.5933 2.5444 27 1 1.6303 0.7287 4.9197 28 1 2.7865 -1.1155 10.3456 29 1 3.9141 -2.5233 6.6043 30 1 4.1142 -3.4551 4.3420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527050999.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:40 Heat of formation + Delta-G solvation = -52.325416 kcal Electronic energy + Delta-G solvation = -16172.669154 eV Core-core repulsion = 13353.968758 eV Total energy + Delta-G solvation = -2818.700396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08162 -38.40154 -36.42643 -34.56916 -33.76538 -31.41121 -31.11310 -28.78534 -26.04990 -24.67064 -22.11188 -21.83963 -19.85804 -18.35038 -17.60686 -16.39629 -15.91552 -15.62611 -15.36563 -14.45066 -14.34415 -14.21925 -13.89058 -13.14864 -12.97506 -12.83021 -12.43323 -12.28143 -11.76387 -11.58626 -11.24977 -10.85827 -10.79418 -10.74287 -9.95208 -9.84643 -9.44080 -9.36676 -8.30948 -7.91924 -7.32194 -7.09651 -4.77828 2.20299 2.56050 3.02588 3.11169 3.14613 3.26738 3.32089 3.87612 4.19566 4.52515 4.69414 4.80864 4.92459 5.35572 5.40892 5.56168 5.73325 5.83957 6.26197 6.27953 6.41285 6.50195 6.96125 7.04888 7.10502 7.38798 7.55860 7.69654 7.93115 8.16978 8.37248 8.54028 8.63532 9.38480 9.91543 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.005978 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.265839 B = 4682.516735 C = 4945.826586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.123 0.877 4 O -0.542 6.542 5 C 0.469 3.531 6 O -0.471 6.471 7 N -0.659 5.659 8 C 0.357 3.643 9 C -0.292 4.292 10 C 0.128 3.872 11 C -0.439 4.439 12 H 0.094 0.906 13 C 0.087 3.913 14 N -0.799 5.799 15 Si 0.919 3.081 16 H -0.266 1.266 17 H -0.290 1.290 18 H -0.248 1.248 19 C -0.304 4.304 20 C 0.138 3.862 21 N -0.557 5.557 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.383 0.617 26 H 0.408 0.592 27 H 0.110 0.890 28 H 0.289 0.711 29 H 0.112 0.888 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 1.023 -10.529 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.026 3.974 3 H 0.140 0.860 4 O -0.347 6.347 5 C 0.253 3.747 6 O -0.340 6.340 7 N -0.306 5.306 8 C 0.132 3.868 9 C -0.317 4.317 10 C 0.120 3.880 11 C -0.469 4.469 12 H 0.112 0.888 13 C -0.134 4.134 14 N -0.423 5.423 15 Si 0.746 3.254 16 H -0.192 1.192 17 H -0.218 1.218 18 H -0.171 1.171 19 C -0.327 4.327 20 C -0.015 4.015 21 N -0.276 5.276 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.232 0.768 26 H 0.244 0.756 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.473 0.508 -11.388 12.246 hybrid contribution -0.708 -0.386 1.325 1.551 sum -5.181 0.122 -10.064 11.320 Atomic orbital electron populations 1.22455 0.94262 1.03578 1.03617 1.21849 0.94268 0.97276 0.83971 0.85988 1.86559 1.77705 1.29886 1.40547 1.21685 0.81367 0.86611 0.85069 1.90806 1.36360 1.21355 1.85484 1.43543 1.50664 1.31328 1.05109 1.18124 0.93161 0.91022 0.84515 1.21201 1.13303 1.05647 0.91588 1.17677 0.87208 0.89999 0.93155 1.19470 1.42415 0.96789 0.88216 0.88791 1.26188 0.90646 1.02103 0.94492 1.69628 1.33168 1.39627 0.99876 0.86242 0.79897 0.81023 0.78264 1.19177 1.21793 1.17147 1.22017 1.10260 1.02734 0.97738 1.21850 0.94672 0.96990 0.88028 1.67312 1.16851 1.10052 1.33418 0.90864 0.90635 0.91622 0.76775 0.75635 0.87226 0.90086 0.87053 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.47 37.16 0.35 -1.22 16 2 C 0.09 1.04 4.00 -27.88 -0.11 0.93 16 3 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 4 O -0.54 -6.98 12.99 -55.09 -0.72 -7.70 16 5 C 0.47 7.86 7.13 -10.98 -0.08 7.78 16 6 O -0.47 -10.11 14.58 -14.30 -0.21 -10.31 16 7 N -0.66 -11.11 5.35 -11.49 -0.06 -11.17 16 8 C 0.36 7.88 7.42 -154.71 -1.15 6.73 16 9 C -0.29 -6.59 9.73 -38.48 -0.37 -6.97 16 10 C 0.13 3.19 5.16 -106.55 -0.55 2.65 16 11 C -0.44 -11.44 9.65 -37.65 -0.36 -11.80 16 12 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 13 C 0.09 2.19 5.45 -17.34 -0.09 2.09 16 14 N -0.80 -20.45 13.92 55.55 0.77 -19.67 16 15 Si 0.92 20.34 24.50 -169.99 -4.17 16.18 16 16 H -0.27 -5.69 6.47 56.52 0.37 -5.33 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.25 -5.72 6.95 56.52 0.39 -5.33 16 19 C -0.30 -7.34 7.32 -38.71 -0.28 -7.62 16 20 C 0.14 3.22 11.15 -17.68 -0.20 3.02 16 21 N -0.56 -13.46 7.85 -12.52 -0.10 -13.56 16 22 H 0.07 0.55 7.77 -51.93 -0.40 0.14 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.38 4.11 8.79 45.56 0.40 4.51 16 26 H 0.41 5.11 8.31 -40.82 -0.34 4.77 16 27 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 29 H 0.11 2.62 4.44 -52.48 -0.23 2.39 16 30 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -32.13 262.41 -5.66 -37.79 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.29 Total: 8.90 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.85 Total: -4.41 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.61 Total: -44.41 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.92 Total: -18.01 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.18 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.13 -5.66 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527050999.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.532 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds