Wall clock time and date at job start Mon Mar 30 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47452 * 2 1 4 4 O 1.42895 * 109.47059 * 239.99427 * 2 1 3 5 5 C 1.50706 * 109.47143 * 119.99768 * 2 1 3 6 6 O 1.21272 * 119.99908 * 115.00029 * 5 2 1 7 7 N 1.34775 * 119.99714 * 294.99454 * 5 2 1 8 8 C 1.39474 * 119.99654 * 185.14023 * 7 5 2 9 9 C 1.38597 * 119.57767 * 174.86850 * 8 7 5 10 10 C 1.40808 * 118.79695 * 180.02562 * 9 8 7 11 11 C 1.41544 * 120.99664 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00177 * 330.78966 * 11 10 9 13 13 C 1.40029 * 119.99834 * 150.79227 * 11 10 9 14 14 N 1.30747 * 120.00060 * 164.05515 * 13 11 10 15 15 Si 1.86801 * 120.00304 * 344.05693 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.12050 * 15 13 11 17 17 H 1.48500 * 109.47538 * 210.12188 * 15 13 11 18 18 H 1.48500 * 109.47092 * 330.12163 * 15 13 11 19 19 C 1.41170 * 118.00461 * 359.97438 * 10 9 8 20 20 C 1.37587 * 119.02040 * 0.02562 * 19 10 9 21 21 N 1.32088 * 121.10350 * 359.97319 * 20 19 10 22 22 H 1.09007 * 109.46952 * 300.00138 * 1 2 3 23 23 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 24 24 H 1.08999 * 109.47313 * 180.02562 * 1 2 3 25 25 H 0.96701 * 114.00467 * 300.00425 * 4 2 1 26 26 H 0.96997 * 120.00483 * 5.14634 * 7 5 2 27 27 H 1.08001 * 120.60425 * 0.02562 * 9 8 7 28 28 H 0.96998 * 119.99741 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.49336 * 179.97438 * 19 10 9 30 30 H 1.07997 * 119.45323 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 8 2.6529 -1.7466 1.1216 7 7 1.7920 -0.1940 2.4520 8 6 2.3470 -0.7918 3.5833 9 6 2.1833 -0.1939 4.8230 10 6 2.7510 -0.8113 5.9540 11 6 2.6128 -0.2410 7.2421 12 1 2.5131 0.8289 7.3511 13 6 2.6056 -1.0639 8.3750 14 7 2.7919 -0.5455 9.5608 15 14 2.3296 -2.9024 8.1924 16 1 3.6370 -3.5839 8.0148 17 1 1.6599 -3.4259 9.4100 18 1 1.4727 -3.1589 7.0070 19 6 3.4620 -2.0161 5.7648 20 6 3.5715 -2.5341 4.4948 21 7 3.0239 -1.9236 3.4594 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.7209 -1.5953 -1.2328 26 1 1.2329 0.5933 2.5444 27 1 1.6303 0.7287 4.9197 28 1 2.7865 -1.1155 10.3456 29 1 3.9141 -2.5233 6.6043 30 1 4.1142 -3.4551 4.3420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527050999.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:40 Heat of formation + Delta-G solvation = -76.504670 kcal Electronic energy + Delta-G solvation = -16173.717645 eV Core-core repulsion = 13353.968758 eV Total energy + Delta-G solvation = -2819.748887 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53417 -40.00990 -37.57210 -36.22205 -35.50580 -33.23942 -32.21850 -30.33053 -27.94494 -25.77769 -23.83227 -23.41083 -21.31599 -19.98007 -19.00826 -17.99785 -17.46091 -16.96242 -16.66273 -16.17713 -16.02938 -15.53097 -15.23095 -14.86005 -14.68213 -14.39714 -13.50557 -13.34881 -13.09864 -13.01007 -12.78958 -12.73521 -12.52785 -11.78060 -11.71331 -11.51903 -11.20576 -10.78944 -10.19973 -9.67314 -9.03318 -8.98782 -6.74313 0.48613 0.72211 1.26601 1.39503 1.45672 1.70446 1.98653 2.08252 2.65029 3.28142 3.48354 3.53787 3.98543 4.07653 4.13543 4.45503 4.60701 4.64707 4.72506 4.78624 4.87085 5.17812 5.20232 5.23446 5.39733 5.70148 6.01765 6.17224 6.39886 6.48872 6.59676 6.68163 7.16054 7.65155 8.07046 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.051245 B = 0.005978 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.265839 B = 4682.516735 C = 4945.826586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 H 0.148 0.852 4 O -0.555 6.555 5 C 0.465 3.535 6 O -0.522 6.522 7 N -0.646 5.646 8 C 0.356 3.644 9 C -0.296 4.296 10 C 0.113 3.887 11 C -0.468 4.468 12 H 0.070 0.930 13 C 0.057 3.943 14 N -0.831 5.831 15 Si 0.967 3.033 16 H -0.253 1.253 17 H -0.274 1.274 18 H -0.264 1.264 19 C -0.316 4.316 20 C 0.133 3.867 21 N -0.576 5.576 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.391 0.609 26 H 0.429 0.571 27 H 0.130 0.870 28 H 0.299 0.701 29 H 0.115 0.885 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 0.956 -11.980 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.165 0.835 4 O -0.361 6.361 5 C 0.252 3.748 6 O -0.394 6.394 7 N -0.296 5.296 8 C 0.129 3.871 9 C -0.322 4.322 10 C 0.104 3.896 11 C -0.498 4.498 12 H 0.088 0.912 13 C -0.161 4.161 14 N -0.456 5.456 15 Si 0.791 3.209 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.339 4.339 20 C -0.020 4.020 21 N -0.295 5.295 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.241 0.759 26 H 0.269 0.731 27 H 0.148 0.852 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.367 0.487 -12.846 13.931 hybrid contribution -0.443 -0.309 1.631 1.718 sum -5.810 0.178 -11.215 12.632 Atomic orbital electron populations 1.22443 0.91469 1.03808 1.05488 1.22004 0.96165 0.97198 0.80676 0.83484 1.86541 1.78278 1.30678 1.40643 1.22797 0.79971 0.86020 0.86013 1.90782 1.38612 1.23795 1.86218 1.43560 1.50336 1.31689 1.04016 1.18407 0.92328 0.90390 0.86003 1.21421 1.13110 1.06260 0.91377 1.17892 0.87524 0.90744 0.93424 1.19469 1.44869 0.95963 0.89507 0.91168 1.26767 0.90132 1.05213 0.94023 1.69636 1.34204 1.41158 1.00586 0.85503 0.80080 0.77205 0.78077 1.17876 1.19993 1.18790 1.22115 1.10658 1.02781 0.98368 1.22283 0.94400 0.97772 0.87580 1.67448 1.17321 1.10946 1.33832 0.89329 0.88432 0.92255 0.75895 0.73112 0.85211 0.89017 0.86713 0.82749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.47 71.98 0.68 -1.69 16 2 C 0.10 2.06 4.00 29.85 0.12 2.18 16 3 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 4 O -0.56 -12.99 12.99 -129.99 -1.69 -14.68 16 5 C 0.47 14.67 7.13 87.66 0.62 15.29 16 6 O -0.52 -21.88 14.58 15.99 0.23 -21.65 16 7 N -0.65 -20.39 5.35 -308.66 -1.65 -22.05 16 8 C 0.36 15.22 7.42 132.75 0.98 16.21 16 9 C -0.30 -13.18 9.73 22.98 0.22 -12.96 16 10 C 0.11 5.62 5.16 -21.12 -0.11 5.51 16 11 C -0.47 -24.87 9.65 23.52 0.23 -24.64 16 12 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 13 C 0.06 2.88 5.45 85.29 0.47 3.35 16 14 N -0.83 -42.89 13.92 21.84 0.30 -42.59 16 15 Si 0.97 41.38 24.50 68.60 1.68 43.06 16 16 H -0.25 -10.26 6.47 99.48 0.64 -9.62 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.26 -11.86 6.95 99.48 0.69 -11.17 16 19 C -0.32 -15.08 7.32 22.84 0.17 -14.91 16 20 C 0.13 6.08 11.15 84.50 0.94 7.02 16 21 N -0.58 -27.26 7.85 -193.54 -1.52 -28.77 16 22 H 0.09 0.95 7.77 -2.38 -0.02 0.93 16 23 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.39 7.73 8.79 -74.06 -0.65 7.08 16 26 H 0.43 9.46 8.31 -92.71 -0.77 8.69 16 27 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 28 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 29 H 0.12 5.31 4.44 -2.91 -0.01 5.29 16 30 H 0.16 6.06 8.06 -2.91 -0.02 6.03 16 Total: -1.00 -69.48 262.41 1.38 -68.10 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.31 Total: 23.21 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 4.33 Total: -4.64 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -2.87 Total: -93.41 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.46 Total: -36.33 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.68 Total: 43.06 kcal Total: -69.48 1.38 -68.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527050999.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.401 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds