Wall clock time and date at job start Mon Mar 30 2020 17:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37103 * 120.00145 * 2 1 4 4 H 1.07994 * 120.00294 * 202.41095 * 3 2 1 5 5 C 1.38949 * 119.99844 * 22.41349 * 3 2 1 6 6 N 1.31418 * 119.99864 * 11.58684 * 5 3 2 7 7 Si 1.86803 * 120.00121 * 191.59022 * 5 3 2 8 8 H 1.48501 * 109.46961 * 89.99841 * 7 5 3 9 9 H 1.48501 * 109.47134 * 209.99865 * 7 5 3 10 10 H 1.48499 * 109.46890 * 329.99631 * 7 5 3 11 11 C 1.34778 * 120.00011 * 179.97438 * 2 1 3 12 12 O 1.21300 * 119.99730 * 179.97438 * 11 2 1 13 13 C 1.50691 * 120.00197 * 359.72900 * 11 2 1 14 14 C 1.50695 * 109.47546 * 180.27328 * 13 11 2 15 15 C 1.38252 * 120.38907 * 269.72220 * 14 13 11 16 16 N 1.31849 * 120.88540 * 179.74751 * 15 14 13 17 17 C 1.31838 * 121.78234 * 0.54120 * 16 15 14 18 18 C 1.38706 * 120.68188 * 359.71810 * 17 16 15 19 19 O 1.35914 * 120.47341 * 179.97438 * 18 17 16 20 20 C 1.38535 * 120.38901 * 89.99410 * 14 13 11 21 21 H 1.09000 * 109.46878 * 272.16053 * 1 2 3 22 22 H 1.08998 * 109.47055 * 32.15731 * 1 2 3 23 23 H 1.09000 * 109.47029 * 152.16019 * 1 2 3 24 24 H 0.97006 * 119.99565 * 180.02562 * 6 5 3 25 25 H 1.08998 * 109.46724 * 300.27395 * 13 11 2 26 26 H 1.09001 * 109.47321 * 60.26875 * 13 11 2 27 27 H 1.07997 * 119.55706 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.65817 * 179.75107 * 17 16 15 29 29 H 0.96706 * 113.99809 * 270.02765 * 19 18 17 30 30 H 1.07994 * 120.81340 * 359.96013 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2227 -0.3566 5 6 1.5345 2.3452 0.4588 6 7 0.3896 2.2706 1.0997 7 14 2.3337 4.0078 0.1647 8 1 1.8582 4.5639 -1.1276 9 1 1.9688 4.9343 1.2664 10 1 3.8093 3.8470 0.1214 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3855 -2.4723 0.0073 14 6 2.3647 -3.6177 0.0133 15 6 2.8148 -4.1592 -1.1765 16 7 3.6753 -5.1582 -1.1827 17 6 4.1328 -5.6876 -0.0653 18 6 3.7234 -5.2015 1.1676 19 8 4.1974 -5.7508 2.3169 20 6 2.8201 -4.1441 1.2111 21 1 -0.3633 0.0387 1.0269 22 1 -0.3633 0.8700 -0.5470 23 1 -0.3633 -0.9087 -0.4799 24 1 -0.0406 3.0790 1.4196 25 1 0.7588 -2.5253 0.8975 26 1 0.7588 -2.5346 -0.8824 27 1 2.4603 -3.7556 -2.1134 28 1 4.8339 -6.5079 -0.1104 29 1 3.6628 -6.4836 2.6523 30 1 2.4826 -3.7432 2.1554 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597012112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:58 Heat of formation + Delta-G solvation = -59.760115 kcal Electronic energy + Delta-G solvation = -16175.512132 eV Core-core repulsion = 13356.489343 eV Total energy + Delta-G solvation = -2819.022789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52038 -40.19313 -38.20339 -36.69015 -34.54895 -33.57250 -31.49531 -29.38479 -27.90774 -26.17504 -24.54229 -23.48474 -20.79523 -19.01196 -18.88020 -17.97096 -17.91410 -17.80922 -16.59077 -16.26400 -15.97196 -15.75275 -14.55555 -14.50388 -14.19893 -13.98689 -13.89007 -13.38275 -13.33792 -13.04133 -12.95734 -12.64120 -12.34890 -12.15882 -12.07426 -11.01943 -10.75640 -10.45513 -10.31124 -9.73884 -9.68980 -8.33243 -5.98729 0.03653 0.22161 1.36427 1.40346 1.52046 2.02966 2.27109 2.65565 3.02891 3.09085 3.22985 3.56246 3.77512 3.89264 4.05907 4.16474 4.23044 4.53723 4.58946 4.77247 4.82223 5.06395 5.08331 5.25088 5.43284 5.44496 5.60762 6.09493 6.48416 6.73772 6.95045 7.17311 7.48094 8.03710 8.67827 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.043341 B = 0.005639 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.885593 B = 4964.151004 C = 5022.553583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.464 5.464 3 C -0.344 4.344 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.280 1.280 11 C 0.439 3.561 12 O -0.633 6.633 13 C -0.080 4.080 14 C -0.091 4.091 15 C 0.087 3.913 16 N -0.485 5.485 17 C 0.062 3.938 18 C 0.061 3.939 19 O -0.498 6.498 20 C -0.107 4.107 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.273 0.727 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.167 0.833 28 H 0.184 0.816 29 H 0.414 0.586 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -12.912 -0.057 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.182 5.182 3 C -0.472 4.472 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.534 5.534 7 Si 0.811 3.189 8 H -0.189 1.189 9 H -0.198 1.198 10 H -0.205 1.205 11 C 0.229 3.771 12 O -0.521 6.521 13 C -0.120 4.120 14 C -0.094 4.094 15 C -0.069 4.069 16 N -0.194 5.194 17 C -0.096 4.096 18 C 0.014 3.986 19 O -0.310 6.310 20 C -0.133 4.133 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.132 0.868 26 H 0.144 0.856 27 H 0.184 0.816 28 H 0.201 0.799 29 H 0.273 0.727 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.926 -12.684 -0.794 12.854 hybrid contribution -0.243 1.168 0.993 1.552 sum -2.170 -11.516 0.199 11.721 Atomic orbital electron populations 1.21518 0.78994 1.00537 1.01377 1.43868 1.06947 1.04511 1.62922 1.19581 0.99117 0.85981 1.42532 0.91460 1.26031 0.97025 1.02675 0.94566 1.70063 1.17781 1.30345 1.35246 0.85031 0.78091 0.77284 0.78519 1.18927 1.19751 1.20483 1.20898 0.87859 0.86022 0.82303 1.90519 1.16363 1.88029 1.57206 1.20535 0.96734 0.88015 1.06720 1.20458 0.98730 0.96210 0.93980 1.22838 0.93398 0.92488 0.98217 1.67684 1.10014 1.10745 1.30999 1.23460 0.99230 1.00149 0.86788 1.19454 0.95815 0.95697 0.87645 1.84809 1.54302 1.54037 1.37831 1.22005 0.95851 0.96225 0.99219 0.93407 0.93014 0.90542 0.91707 0.86787 0.85641 0.81571 0.79935 0.72650 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.96 8.52 127.77 1.09 6.05 16 2 N -0.46 -23.50 3.02 -658.90 -1.99 -25.49 16 3 C -0.34 -19.64 9.29 84.04 0.78 -18.86 16 4 H 0.07 4.16 7.41 -2.91 -0.02 4.14 16 5 C 0.00 -0.06 5.11 84.93 0.43 0.37 16 6 N -0.90 -46.95 10.62 21.66 0.23 -46.72 16 7 Si 0.99 42.73 29.57 68.60 2.03 44.76 16 8 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 C 0.44 20.97 7.62 87.65 0.67 21.64 16 12 O -0.63 -36.25 15.73 -3.09 -0.05 -36.29 16 13 C -0.08 -2.62 4.38 29.10 0.13 -2.49 16 14 C -0.09 -2.99 4.39 -19.79 -0.09 -3.08 16 15 C 0.09 2.78 10.85 84.69 0.92 3.70 16 16 N -0.48 -15.27 10.35 -195.44 -2.02 -17.29 16 17 C 0.06 1.68 11.14 84.80 0.94 2.62 16 18 C 0.06 1.67 6.74 22.60 0.15 1.82 16 19 O -0.50 -11.08 13.53 -92.59 -1.25 -12.34 16 20 C -0.11 -3.31 9.81 22.56 0.22 -3.09 16 21 H 0.05 2.08 7.54 -2.39 -0.02 2.06 16 22 H 0.05 2.32 7.06 -2.39 -0.02 2.30 16 23 H 0.08 2.39 6.37 -2.39 -0.02 2.38 16 24 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 25 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16 26 H 0.13 3.26 7.36 -2.39 -0.02 3.25 16 27 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.41 4.21 9.06 -74.05 -0.67 3.54 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -73.83 267.32 2.69 -71.14 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.50 Total: 13.56 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.25 Total: 8.68 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -3.78 Total: -89.51 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -1.30 Total: -48.63 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.83 2.69 -71.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.376 kcal (2) G-P(sol) polarization free energy of solvation -73.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds