Wall clock time and date at job start Mon Mar 30 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47212 * 2 1 4 4 C 1.36905 * 119.99873 * 278.65974 * 3 2 1 5 5 H 1.08003 * 119.99972 * 237.47962 * 4 3 2 6 6 C 1.39024 * 119.99866 * 57.47744 * 4 3 2 7 7 N 1.31379 * 120.00117 * 44.45984 * 6 4 3 8 8 Si 1.86800 * 119.99730 * 224.45494 * 6 4 3 9 9 H 1.48498 * 109.47045 * 60.00538 * 8 6 4 10 10 H 1.48504 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47498 * 300.00131 * 8 6 4 12 12 C 1.34776 * 119.99932 * 98.66138 * 3 2 1 13 13 O 1.21625 * 119.99722 * 184.53364 * 12 3 2 14 14 C 1.47411 * 120.00128 * 4.53006 * 12 3 2 15 15 C 1.40052 * 120.60146 * 312.76682 * 14 12 3 16 16 C 1.38329 * 118.33792 * 180.26281 * 15 14 12 17 17 C 1.38362 * 119.46487 * 359.45827 * 16 15 14 18 18 N 1.31895 * 121.19983 * 0.30367 * 17 16 15 19 19 C 1.32214 * 121.80785 * 359.97389 * 18 17 16 20 20 O 1.35429 * 119.80351 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.46876 * 320.48824 * 1 2 3 22 22 H 1.08994 * 109.48011 * 80.48752 * 1 2 3 23 23 H 1.09003 * 109.47257 * 200.49155 * 1 2 3 24 24 H 1.09005 * 109.46790 * 240.00315 * 2 1 3 25 25 H 1.08994 * 109.47860 * 120.00292 * 2 1 3 26 26 H 0.97004 * 119.99883 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.83024 * 0.02562 * 15 14 12 28 28 H 1.08004 * 120.26160 * 179.74025 * 16 15 14 29 29 H 1.08005 * 119.39702 * 180.27965 * 17 16 15 30 30 H 0.96699 * 114.00095 * 90.00222 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0782 2.0861 -1.1721 5 1 3.0177 2.5022 -1.5047 6 6 0.9295 2.2662 -1.9343 7 7 -0.1992 2.6023 -1.3521 8 14 0.9912 2.0306 -3.7864 9 1 1.4119 0.6402 -4.0947 10 1 -0.3547 2.2802 -4.3622 11 1 1.9654 2.9845 -4.3747 12 6 2.4086 1.9580 1.1539 13 8 2.7358 3.1293 1.1680 14 6 2.4391 1.1691 2.3988 15 6 1.3523 0.3621 2.7582 16 6 1.4285 -0.3540 3.9393 17 6 2.5684 -0.2627 4.7182 18 7 3.5826 0.4997 4.3583 19 6 3.5598 1.2090 3.2427 20 8 4.6244 1.9781 2.9121 21 1 -0.3633 0.7929 0.6539 22 1 -0.3635 0.1698 -1.0134 23 1 -0.3634 -0.9627 0.3598 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 -1.0008 2.7276 -1.8839 27 1 0.4751 0.3034 2.1309 28 1 0.6066 -0.9827 4.2485 29 1 2.6285 -0.8259 5.6379 30 1 5.2880 1.5219 2.3768 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:12 Heat of formation + Delta-G solvation = -16.783233 kcal Electronic energy + Delta-G solvation = -16986.085630 eV Core-core repulsion = 14168.926459 eV Total energy + Delta-G solvation = -2817.159171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34106 -38.04942 -36.75446 -34.93461 -32.74898 -31.62071 -30.02522 -29.59547 -25.45094 -23.60639 -22.92740 -22.25837 -19.61928 -18.43868 -17.05677 -16.43486 -16.22532 -15.90413 -14.92986 -14.44836 -14.34356 -13.88510 -13.34321 -13.13063 -12.77747 -12.21822 -12.02473 -11.95003 -11.53491 -11.36370 -11.23139 -11.03500 -10.53164 -10.52073 -10.30228 -9.44968 -9.32144 -8.79647 -8.55424 -8.24409 -7.35924 -6.45251 -4.05602 1.11695 1.40941 3.15376 3.24620 3.28264 3.65584 3.87079 4.12016 4.25637 4.67659 4.76672 4.97124 5.09700 5.29260 5.41546 5.70677 5.74928 5.84243 6.14376 6.20650 6.29957 6.34338 6.41058 6.70461 6.74689 7.14761 7.54502 7.82782 8.11188 8.41292 8.53705 9.19614 9.28530 10.04827 10.51717 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.037987 B = 0.008483 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.910694 B = 3299.997540 C = 3735.130991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 N -0.436 5.436 4 C -0.365 4.365 5 H 0.083 0.917 6 C 0.082 3.918 7 N -0.805 5.805 8 Si 0.881 3.119 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.509 3.491 13 O -0.541 6.541 14 C -0.166 4.166 15 C -0.046 4.046 16 C -0.194 4.194 17 C 0.121 3.879 18 N -0.512 5.512 19 C 0.340 3.660 20 O -0.465 6.465 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.267 0.733 27 H 0.153 0.847 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -10.262 5.655 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.157 5.157 4 C -0.490 4.490 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.435 5.435 8 Si 0.706 3.294 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.296 3.704 13 O -0.420 6.420 14 C -0.173 4.173 15 C -0.072 4.072 16 C -0.214 4.214 17 C -0.037 4.037 18 N -0.231 5.231 19 C 0.161 3.839 20 O -0.271 6.271 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.170 0.830 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.969 -9.063 6.416 11.146 hybrid contribution -0.742 -0.525 -1.657 1.889 sum 0.227 -9.588 4.760 10.706 Atomic orbital electron populations 1.22239 0.96529 0.99360 1.03466 1.21727 0.94472 0.85674 1.00499 1.43277 1.57640 1.09516 1.05276 1.18747 0.94853 1.39081 0.96306 0.89927 1.25407 0.95306 0.92759 0.99728 1.70443 1.02037 1.32740 1.38250 0.86771 0.77591 0.79676 0.85405 1.19607 1.21186 1.19462 1.18318 0.83247 0.86567 0.82297 1.90680 1.50929 1.15681 1.84752 1.21762 0.96364 0.99949 0.99198 1.22261 0.98097 0.91362 0.95431 1.22048 1.00066 1.02951 0.96327 1.22522 0.88295 0.94147 0.98723 1.67158 1.31095 1.07863 1.16998 1.19215 0.88009 0.88362 0.88299 1.84780 1.32026 1.36763 1.73488 0.91632 0.91883 0.94303 0.91665 0.92689 0.92240 0.83004 0.84413 0.82571 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.37 37.15 0.27 -2.69 16 2 C 0.10 1.98 5.48 -4.04 -0.02 1.96 16 3 N -0.44 -10.75 2.54 -116.04 -0.30 -11.04 16 4 C -0.36 -9.93 8.37 -15.00 -0.13 -10.05 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.08 2.11 4.07 -17.45 -0.07 2.04 16 7 N -0.80 -21.43 12.21 55.50 0.68 -20.75 16 8 Si 0.88 19.40 29.69 -169.99 -5.05 14.36 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.51 12.90 6.96 -12.53 -0.09 12.82 16 13 O -0.54 -16.19 16.46 -5.03 -0.08 -16.27 16 14 C -0.17 -3.41 5.01 -104.69 -0.52 -3.94 16 15 C -0.05 -0.77 7.58 -38.87 -0.29 -1.06 16 16 C -0.19 -2.56 10.09 -39.50 -0.40 -2.96 16 17 C 0.12 1.64 11.17 -17.48 -0.20 1.45 16 18 N -0.51 -8.82 10.37 -12.96 -0.13 -8.96 16 19 C 0.34 6.63 7.75 -16.59 -0.13 6.50 16 20 O -0.46 -9.00 12.58 -28.26 -0.36 -9.35 16 21 H 0.06 1.37 6.82 -51.93 -0.35 1.01 16 22 H 0.06 1.30 6.81 -51.93 -0.35 0.94 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 25 H 0.05 0.95 5.18 -51.93 -0.27 0.68 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 27 H 0.15 2.53 4.29 -52.49 -0.23 2.30 16 28 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.40 5.62 9.06 45.56 0.41 6.04 16 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -33.81 259.91 -4.93 -38.74 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.04 Total: 5.30 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.57 Total: 4.06 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.25 Total: -40.75 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.44 Total: -25.62 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.05 Total: 14.36 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.81 -4.93 -38.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.957 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds