Wall clock time and date at job start Mon Mar 30 2020 17:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38355 * 119.40481 * 2 1 4 4 C 1.38337 * 119.45688 * 180.02562 * 3 2 1 5 5 C 1.39979 * 118.34893 * 359.97438 * 4 3 2 6 6 C 1.47526 * 120.59625 * 180.02562 * 5 4 3 7 7 O 1.21597 * 119.99920 * 179.72843 * 6 5 4 8 8 N 1.34777 * 120.00028 * 359.97438 * 6 5 4 9 9 C 1.46506 * 119.99880 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46931 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99861 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00305 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00241 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46729 * 90.00386 * 14 12 10 16 16 H 1.48499 * 109.47283 * 209.99961 * 14 12 10 17 17 H 1.48496 * 109.46819 * 330.00503 * 14 12 10 18 18 C 1.40282 * 118.80706 * 0.28117 * 5 4 3 19 19 O 1.35425 * 119.79892 * 179.72767 * 18 5 4 20 20 N 1.31875 * 119.40736 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.46853 * 90.00444 * 1 2 3 22 22 H 1.09001 * 109.46982 * 210.00102 * 1 2 3 23 23 H 1.09003 * 109.47098 * 330.00386 * 1 2 3 24 24 H 1.08005 * 120.27514 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.82630 * 179.97438 * 4 3 2 26 26 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 27 27 H 1.08996 * 109.47564 * 300.00632 * 9 8 6 28 28 H 1.09000 * 109.46872 * 60.00429 * 9 8 6 29 29 H 0.96992 * 120.00516 * 179.97438 * 13 12 10 30 30 H 0.96699 * 114.00460 * 89.99929 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0005 6 6 5.7097 -0.0813 -0.0005 7 8 6.2769 -1.1568 0.0045 8 7 6.4278 1.0593 -0.0010 9 6 7.8918 1.0031 -0.0005 10 6 8.4482 2.4036 -0.0006 11 1 7.7783 3.2508 -0.0007 12 6 9.8123 2.6034 -0.0007 13 7 10.2980 3.8256 -0.0013 14 14 10.9710 1.1381 0.0001 15 1 11.2781 0.7492 -1.3998 16 1 12.2291 1.5023 0.7000 17 1 10.3269 -0.0018 0.7006 18 6 3.4758 -1.2040 -0.0060 19 8 4.0992 -2.4062 -0.0117 20 7 2.1546 -1.1488 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6411 2.1376 -0.0004 25 1 4.1223 2.1345 -0.0010 26 1 5.9754 1.9173 -0.0011 27 1 8.2349 0.4763 0.8899 28 1 8.2355 0.4752 -0.8900 29 1 11.2577 3.9662 -0.0010 30 1 4.2804 -2.7596 0.8700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701243766.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:26 Heat of formation + Delta-G solvation = -72.988124 kcal Electronic energy + Delta-G solvation = -15935.354607 eV Core-core repulsion = 13115.758209 eV Total energy + Delta-G solvation = -2819.596398 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88951 -40.05206 -38.26540 -36.19061 -34.69786 -33.88610 -32.60288 -30.24859 -28.58977 -24.98463 -24.10485 -23.57982 -21.69875 -19.85768 -19.41799 -18.23525 -17.99224 -16.90477 -16.63967 -16.23973 -16.06487 -15.41224 -15.23120 -14.83072 -14.53517 -14.18385 -14.02250 -13.56290 -13.15215 -13.02965 -13.00099 -12.71948 -12.61365 -11.94419 -11.68274 -11.20527 -11.01651 -10.93092 -10.47553 -10.09836 -9.77814 -8.41099 -6.48351 -0.48504 0.06027 1.32573 1.35162 1.47287 1.80665 2.22934 2.27990 2.47861 2.73422 2.94681 3.50722 3.68324 3.74577 3.95677 4.28860 4.43686 4.69379 4.75790 4.83325 4.93019 4.99233 5.05827 5.14856 5.23074 5.41369 5.52112 6.05773 6.50227 6.52472 6.72551 6.81562 7.12185 7.28906 8.73366 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.044992 B = 0.005543 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.188912 B = 5050.022369 C = 5649.268686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.166 3.834 3 C -0.176 4.176 4 C -0.023 4.023 5 C -0.227 4.227 6 C 0.548 3.452 7 O -0.575 6.575 8 N -0.698 5.698 9 C 0.232 3.768 10 C -0.547 4.547 11 H 0.063 0.937 12 C 0.030 3.970 13 N -0.929 5.929 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.260 1.260 18 C 0.355 3.645 19 O -0.480 6.480 20 N -0.531 5.531 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.189 0.811 25 H 0.164 0.836 26 H 0.408 0.592 27 H 0.017 0.983 28 H 0.012 0.988 29 H 0.273 0.727 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.677 -4.146 1.769 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.028 3.972 3 C -0.195 4.195 4 C -0.049 4.049 5 C -0.234 4.234 6 C 0.335 3.665 7 O -0.456 6.456 8 N -0.348 5.348 9 C 0.109 3.891 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.171 4.171 13 N -0.568 5.568 14 Si 0.758 3.242 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.185 1.185 18 C 0.176 3.824 19 O -0.289 6.289 20 N -0.252 5.252 21 H 0.114 0.886 22 H 0.096 0.904 23 H 0.130 0.870 24 H 0.206 0.794 25 H 0.181 0.819 26 H 0.244 0.756 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.499 -5.538 1.190 20.305 hybrid contribution 1.527 0.470 0.387 1.644 sum -17.972 -5.068 1.577 18.739 Atomic orbital electron populations 1.20968 0.85165 1.05298 1.04733 1.22079 0.98939 0.86874 0.89352 1.22354 0.93483 1.00963 1.02715 1.22110 0.95776 0.96614 0.90417 1.21054 0.93257 0.96026 1.13043 1.18374 0.87234 0.84087 0.76799 1.90731 1.72993 1.29853 1.52044 1.45901 1.07761 1.08384 1.72727 1.19157 0.77580 0.96466 0.95923 1.21253 0.93037 0.91381 1.52857 0.91907 1.25545 0.99659 0.98368 0.93513 1.69964 1.14211 1.22058 1.50526 0.85898 0.78817 0.80013 0.79428 1.19145 1.19702 1.18459 1.19271 0.86707 0.84988 0.91451 1.84652 1.76816 1.32385 1.35084 1.67204 1.08541 1.32192 1.17258 0.88550 0.90443 0.87022 0.79359 0.81877 0.75562 0.96532 0.97012 0.91781 0.72340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.16 71.24 0.72 -0.37 16 2 C 0.17 3.22 6.78 42.58 0.29 3.50 16 3 C -0.18 -2.92 9.71 22.32 0.22 -2.70 16 4 C -0.02 -0.53 9.64 22.72 0.22 -0.31 16 5 C -0.23 -7.17 5.90 -19.91 -0.12 -7.29 16 6 C 0.55 21.98 7.77 86.69 0.67 22.66 16 7 O -0.57 -27.10 15.19 16.80 0.26 -26.84 16 8 N -0.70 -28.44 5.50 -470.00 -2.59 -31.02 16 9 C 0.23 11.44 4.50 85.63 0.38 11.83 16 10 C -0.55 -29.90 9.83 25.60 0.25 -29.64 16 11 H 0.06 3.56 7.84 -2.91 -0.02 3.53 16 12 C 0.03 1.67 5.47 84.65 0.46 2.13 16 13 N -0.93 -54.84 13.96 21.45 0.30 -54.55 16 14 Si 0.93 43.87 27.47 68.60 1.88 45.76 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.26 -12.14 6.54 99.48 0.65 -11.48 16 18 C 0.36 11.26 7.77 85.13 0.66 11.92 16 19 O -0.48 -15.90 11.66 -66.39 -0.77 -16.67 16 20 N -0.53 -14.51 10.28 -296.05 -3.04 -17.56 16 21 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.11 0.50 8.07 -2.39 -0.02 0.48 16 24 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 25 H 0.16 3.04 6.52 -2.91 -0.02 3.02 16 26 H 0.41 14.13 6.42 -92.71 -0.60 13.53 16 27 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 28 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.42 10.37 9.06 -74.06 -0.67 9.70 16 Total: -1.00 -74.25 267.67 -0.33 -74.58 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.13 Total: 14.57 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 3.77 Total: 11.73 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.33 Total: -103.12 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.52 Total: -43.51 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Total: -74.25 -0.33 -74.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701243766.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds