Wall clock time and date at job start Mon Mar 30 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28466 * 124.87463 * 2 1 4 4 C 1.31890 * 110.05634 * 180.14562 * 3 2 1 5 5 C 1.47533 * 126.52672 * 179.82291 * 4 3 2 6 6 O 1.21514 * 119.99837 * 179.68632 * 5 4 3 7 7 O 1.34752 * 119.99838 * 359.68228 * 5 4 3 8 8 C 1.34864 * 116.99811 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00222 * 0.02562 * 8 7 5 10 10 C 1.38798 * 120.00131 * 179.72999 * 8 7 5 11 11 N 1.31420 * 119.99885 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99985 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47351 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47211 * 120.00015 * 12 10 8 15 15 H 1.48506 * 109.46622 * 239.99361 * 12 10 8 16 16 C 1.41570 * 106.94430 * 359.55386 * 4 3 2 17 17 C 1.35056 * 124.87914 * 179.64468 * 2 1 3 18 18 C 1.50699 * 126.37328 * 0.02562 * 17 2 1 19 19 C 1.53005 * 117.49954 * 213.75088 * 18 17 2 20 20 C 1.53001 * 117.49875 * 145.09218 * 18 17 2 21 21 H 1.09003 * 109.47168 * 270.35209 * 1 2 3 22 22 H 1.08998 * 109.47169 * 30.35970 * 1 2 3 23 23 H 1.09002 * 109.46797 * 150.35780 * 1 2 3 24 24 H 0.97004 * 120.00336 * 180.02562 * 11 10 8 25 25 H 1.07997 * 127.25042 * 180.26134 * 16 4 3 26 26 H 1.09001 * 115.55192 * 359.41694 * 18 17 2 27 27 H 1.09006 * 117.49754 * 359.97438 * 19 18 17 28 28 H 1.08998 * 117.50397 * 145.02276 * 19 18 17 29 29 H 1.09006 * 117.49740 * 214.98208 * 20 18 17 30 30 H 1.08995 * 117.49893 * 359.97052 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4746 0.7166 -0.0031 5 6 4.6267 1.6382 -0.0079 6 8 5.7585 1.1959 -0.0047 7 8 4.4239 2.9703 -0.0158 8 6 5.5197 3.7564 -0.0203 9 1 6.5037 3.3113 -0.0179 10 6 5.3830 5.1376 -0.0342 11 7 4.1856 5.6793 -0.0435 12 14 6.9008 6.2264 -0.0412 13 1 8.1191 5.3774 -0.0292 14 1 6.8980 7.0718 -1.2620 15 1 6.8918 7.0957 1.1629 16 6 3.5272 -0.6981 0.0052 17 6 2.2373 -1.1079 0.0069 18 6 1.7530 -2.5349 0.0152 19 6 2.5942 -3.5621 0.7756 20 6 2.5801 -3.5662 -0.7550 21 1 -0.3634 0.0063 1.0277 22 1 -0.3633 0.8867 -0.5194 23 1 -0.3633 -0.8932 -0.5083 24 1 4.0900 6.6445 -0.0535 25 1 4.4105 -1.3194 0.0093 26 1 0.6707 -2.6640 0.0256 27 1 3.4983 -3.2058 1.2696 28 1 2.0655 -4.3672 1.2859 29 1 2.0420 -4.3740 -1.2512 30 1 3.4743 -3.2124 -1.2682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745264187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:36 Heat of formation + Delta-G solvation = 29.767852 kcal Electronic energy + Delta-G solvation = -16010.645734 eV Core-core repulsion = 13195.505169 eV Total energy + Delta-G solvation = -2815.140565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.28677 -38.61676 -37.26745 -35.05639 -33.13751 -32.06997 -30.07908 -27.45295 -25.35841 -23.50463 -22.53869 -22.51579 -20.10952 -19.20180 -17.58721 -17.21659 -16.10037 -15.96140 -15.07336 -14.57829 -14.32637 -14.24506 -14.11477 -13.60651 -12.70314 -12.56963 -12.32064 -11.87429 -11.69586 -11.50047 -11.21984 -11.04042 -10.80807 -10.38245 -10.36116 -10.19616 -9.75063 -9.11756 -8.65720 -8.50896 -8.46224 -6.34934 -3.99765 2.07760 2.42682 2.75085 3.21305 3.23767 3.32094 3.82751 3.98681 4.25218 4.31523 4.58301 4.66521 4.78918 4.85144 4.98830 5.13067 5.24517 5.37471 5.48807 5.51892 5.54804 5.78832 5.99153 6.01519 6.25517 6.56036 6.97179 7.17794 7.46347 8.00167 8.38245 8.78525 9.12619 9.95981 10.82705 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.045935 B = 0.005595 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.404183 B = 5003.449839 C = 5529.453996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.290 5.290 3 N -0.240 5.240 4 C 0.035 3.965 5 C 0.477 3.523 6 O -0.549 6.549 7 O -0.195 6.195 8 C -0.378 4.378 9 H 0.098 0.902 10 C 0.041 3.959 11 N -0.857 5.857 12 Si 0.945 3.055 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.182 4.182 17 C 0.032 3.968 18 C -0.091 4.091 19 C -0.164 4.164 20 C -0.165 4.165 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.269 0.731 25 H 0.157 0.843 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 -15.228 0.028 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.078 5.078 3 N -0.075 5.075 4 C -0.124 4.124 5 C 0.323 3.677 6 O -0.445 6.445 7 O -0.100 6.100 8 C -0.455 4.455 9 H 0.116 0.884 10 C -0.163 4.163 11 N -0.493 5.493 12 Si 0.769 3.231 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.210 4.210 17 C -0.092 4.092 18 C -0.111 4.111 19 C -0.201 4.201 20 C -0.202 4.202 21 H 0.099 0.901 22 H 0.115 0.885 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.175 0.825 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.259 -14.134 0.023 16.897 hybrid contribution 1.015 -0.061 0.009 1.017 sum -8.244 -14.196 0.033 16.416 Atomic orbital electron populations 1.22054 0.74010 1.04983 1.04070 1.45321 1.07440 1.02632 1.52443 1.73941 1.03340 1.11865 1.18348 1.21147 0.89923 0.92533 1.08756 1.19308 0.85766 0.82882 0.79774 1.90635 1.23397 1.78305 1.52179 1.83998 1.37489 1.14156 1.74333 1.21388 0.85606 0.86788 1.51692 0.88398 1.25393 0.98594 0.96131 0.96222 1.70035 1.21889 1.11747 1.45645 0.85590 0.80142 0.79286 0.78081 1.18812 1.20159 1.20156 1.21304 0.96162 0.93399 1.10130 1.20320 0.90660 0.88919 1.09267 1.20211 0.97811 0.85346 1.07740 1.23100 1.02218 1.00163 0.94665 1.23104 1.02378 1.00140 0.94603 0.90067 0.88471 0.89211 0.92108 0.82536 0.86886 0.87915 0.88227 0.88240 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 11.05 59.85 0.66 1.59 16 2 N -0.29 -4.80 3.70 -63.85 -0.24 -5.04 16 3 N -0.24 -5.29 11.99 33.41 0.40 -4.89 16 4 C 0.04 0.83 7.17 -82.78 -0.59 0.24 16 5 C 0.48 13.45 7.90 34.52 0.27 13.72 16 6 O -0.55 -16.04 16.17 -19.28 -0.31 -16.35 16 7 O -0.19 -6.13 9.75 -21.72 -0.21 -6.34 16 8 C -0.38 -11.79 9.65 30.94 0.30 -11.49 16 9 H 0.10 3.03 6.86 -52.49 -0.36 2.67 16 10 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 11 N -0.86 -26.18 13.67 55.49 0.76 -25.42 16 12 Si 0.94 21.91 29.55 -169.99 -5.02 16.88 16 13 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 16 C -0.18 -3.44 9.85 -39.35 -0.39 -3.83 16 17 C 0.03 0.49 6.60 -82.21 -0.54 -0.05 16 18 C -0.09 -0.96 5.93 -91.77 -0.54 -1.50 16 19 C -0.16 -1.50 10.05 -26.69 -0.27 -1.77 16 20 C -0.16 -1.50 10.06 -26.69 -0.27 -1.77 16 21 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.09 0.63 7.13 -51.93 -0.37 0.26 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 26 H 0.11 0.90 7.18 -51.93 -0.37 0.53 16 27 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.05 7.97 -51.93 -0.41 0.64 16 LS Contribution 275.91 15.07 4.16 4.16 Total: -1.00 -37.23 275.91 -5.11 -42.34 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.18 Total: -1.60 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.47 Total: -3.74 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.92 Total: -35.36 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.52 Total: -22.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -37.23 -5.11 -42.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745264187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.112 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds