Wall clock time and date at job start Mon Mar 30 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35665 * 116.99899 * 2 1 4 4 C 1.39287 * 119.61526 * 180.02562 * 3 2 1 5 5 C 1.38363 * 119.32160 * 179.97438 * 4 3 2 6 6 C 1.38736 * 118.57110 * 359.97438 * 5 4 3 7 7 C 1.39234 * 119.18272 * 359.97438 * 6 5 4 8 8 C 1.47981 * 119.69944 * 180.02562 * 7 6 5 9 9 O 1.21575 * 119.99954 * 354.44286 * 8 7 6 10 10 N 1.34770 * 120.00310 * 174.43065 * 8 7 6 11 11 C 1.46504 * 119.99919 * 5.00865 * 10 8 7 12 12 C 1.36778 * 120.00480 * 185.00424 * 10 8 7 13 13 H 1.08007 * 119.99870 * 31.66117 * 12 10 8 14 14 C 1.39106 * 120.00558 * 211.65619 * 12 10 8 15 15 N 1.31334 * 119.99608 * 13.13771 * 14 12 10 16 16 Si 1.86795 * 120.00401 * 193.13513 * 14 12 10 17 17 H 1.48497 * 109.47263 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46911 * 120.00225 * 16 14 12 19 19 H 1.48494 * 109.47173 * 240.00019 * 16 14 12 20 20 N 1.31906 * 119.61331 * 359.71845 * 3 2 1 21 21 H 1.08994 * 109.46714 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47490 * 300.00414 * 1 2 3 23 23 H 1.09000 * 109.46728 * 60.00789 * 1 2 3 24 24 H 1.07997 * 120.33248 * 359.94591 * 4 3 2 25 25 H 1.08002 * 120.71264 * 180.02562 * 5 4 3 26 26 H 1.08006 * 120.40819 * 179.97438 * 6 5 4 27 27 H 1.09005 * 109.46758 * 63.31877 * 11 10 8 28 28 H 1.08995 * 109.47505 * 183.31676 * 11 10 8 29 29 H 1.08999 * 109.47058 * 303.32348 * 11 10 8 30 30 H 0.96998 * 119.99850 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2724 -0.0005 5 6 4.0581 2.5084 -0.0011 6 6 3.2679 3.6487 -0.0016 7 6 1.8820 3.5143 -0.0021 8 6 1.0282 4.7229 -0.0033 9 8 1.5333 5.8241 0.0982 10 7 -0.3094 4.6030 -0.1170 11 6 -0.9273 3.2747 -0.1291 12 6 -1.0900 5.7213 -0.2211 13 1 -0.7051 6.6050 -0.7085 14 6 -2.3795 5.7206 0.3005 15 7 -2.7597 4.7590 1.1103 16 14 -3.5704 7.0871 -0.1507 17 1 -2.9029 8.0412 -1.0723 18 1 -4.7616 6.5048 -0.8195 19 1 -3.9937 7.8013 1.0805 20 7 1.3190 2.3102 -0.0056 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 4.0237 0.3661 -0.0001 25 1 5.1355 2.5839 -0.0019 26 1 3.7221 4.6286 -0.0016 27 1 -0.7445 2.7803 0.8250 28 1 -2.0012 3.3749 -0.2864 29 1 -0.4959 2.6806 -0.9347 30 1 -3.6587 4.7587 1.4744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752413972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:44 Heat of formation + Delta-G solvation = -33.101378 kcal Electronic energy + Delta-G solvation = -16734.377908 eV Core-core repulsion = 13916.511129 eV Total energy + Delta-G solvation = -2817.866779 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79024 -40.11473 -38.53257 -36.78655 -34.15221 -33.13103 -31.70310 -28.48664 -28.23622 -26.76598 -24.87095 -23.76351 -21.68191 -19.19698 -18.83983 -18.39534 -17.21475 -17.00497 -16.89769 -16.52252 -16.02743 -15.84698 -15.04564 -14.66668 -14.29771 -14.28578 -13.63747 -13.39836 -13.20757 -13.06031 -12.69811 -12.65990 -12.45545 -12.11275 -12.05062 -11.17009 -10.92304 -10.84419 -10.19246 -9.73037 -9.44532 -8.43872 -6.12960 -0.22903 0.35404 1.37002 1.39664 1.55209 1.97431 2.14588 2.23015 2.82104 2.83521 3.12208 3.32810 3.99621 4.08394 4.13323 4.34328 4.44247 4.50983 4.60084 4.79614 4.94099 5.02694 5.05714 5.19801 5.31369 5.38438 5.46286 6.02051 6.21309 6.39080 6.76934 7.05102 7.29581 7.91438 8.58355 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.008021 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.757460 B = 3489.886810 C = 4243.692382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.291 3.709 4 C -0.169 4.169 5 C -0.031 4.031 6 C -0.167 4.167 7 C 0.113 3.887 8 C 0.464 3.536 9 O -0.625 6.625 10 N -0.428 5.428 11 C 0.140 3.860 12 C -0.349 4.349 13 H 0.076 0.924 14 C 0.000 4.000 15 N -0.884 5.884 16 Si 0.999 3.001 17 H -0.269 1.269 18 H -0.260 1.260 19 H -0.273 1.273 20 N -0.529 5.529 21 H 0.130 0.870 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.179 0.821 25 H 0.194 0.806 26 H 0.141 0.859 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -10.890 -2.499 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C 0.110 3.890 4 C -0.190 4.190 5 C -0.056 4.056 6 C -0.189 4.189 7 C -0.022 4.022 8 C 0.254 3.746 9 O -0.514 6.514 10 N -0.143 5.143 11 C -0.003 4.003 12 C -0.478 4.478 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.521 5.521 16 Si 0.821 3.179 17 H -0.193 1.193 18 H -0.184 1.184 19 H -0.198 1.198 20 N -0.257 5.257 21 H 0.148 0.852 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.197 0.803 25 H 0.211 0.789 26 H 0.158 0.842 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.980 -10.759 -2.351 12.532 hybrid contribution -0.258 0.948 0.086 0.986 sum 5.722 -9.811 -2.265 11.581 Atomic orbital electron populations 1.23093 0.76426 1.04611 1.01814 1.86198 1.23699 1.23681 1.88131 1.20448 0.90738 0.84630 0.93151 1.21632 0.90874 1.01085 1.05395 1.21831 1.02307 0.89157 0.92286 1.22072 0.92273 1.01891 1.02662 1.20867 0.93151 0.89707 0.98512 1.18507 0.83478 0.87982 0.84637 1.90541 1.74275 1.28045 1.58528 1.43764 1.04565 1.07791 1.58180 1.21588 0.97684 0.81612 0.99417 1.19784 0.96199 0.94290 1.37479 0.90623 1.26380 0.99567 1.00736 0.93665 1.70017 1.20401 1.34152 1.27524 0.84808 0.77329 0.77320 0.78428 1.19291 1.18444 1.19841 1.67771 1.40657 0.98469 1.18781 0.85190 0.93603 0.93022 0.80319 0.78930 0.84153 0.94261 0.91845 0.92680 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.37 113.37 1.18 2.10 16 2 O -0.31 -8.95 10.48 -89.82 -0.94 -9.89 16 3 C 0.29 9.43 7.49 84.93 0.64 10.06 16 4 C -0.17 -4.14 10.05 22.55 0.23 -3.91 16 5 C -0.03 -0.74 10.16 22.42 0.23 -0.52 16 6 C -0.17 -5.86 9.63 22.63 0.22 -5.65 16 7 C 0.11 5.01 6.67 41.80 0.28 5.29 16 8 C 0.46 25.73 7.60 86.83 0.66 26.39 16 9 O -0.63 -38.13 16.16 -3.95 -0.06 -38.19 16 10 N -0.43 -24.31 2.97 -662.07 -1.97 -26.27 16 11 C 0.14 6.90 7.80 127.77 1.00 7.90 16 12 C -0.35 -20.73 9.05 84.13 0.76 -19.97 16 13 H 0.08 4.69 7.65 -2.91 -0.02 4.67 16 14 C 0.00 0.01 4.97 84.98 0.42 0.43 16 15 N -0.88 -48.36 11.10 21.69 0.24 -48.12 16 16 Si 1.00 42.51 29.57 68.60 2.03 44.54 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 N -0.53 -21.21 4.82 -298.23 -1.44 -22.65 16 21 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.05 1.36 7.72 -2.39 -0.02 1.34 16 23 H 0.05 1.44 7.24 -2.39 -0.02 1.43 16 24 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 25 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.14 4.97 7.64 -2.91 -0.02 4.95 16 27 H 0.04 1.95 7.06 -2.38 -0.02 1.93 16 28 H 0.06 3.26 5.94 -2.39 -0.01 3.25 16 29 H 0.06 2.48 5.78 -2.39 -0.01 2.47 16 30 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -72.91 261.80 4.62 -68.29 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.16 Total: 10.16 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 5.60 Total: 22.13 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -3.16 Total: -97.04 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -1.00 Total: -48.08 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -72.91 4.62 -68.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752413972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.187 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds