Wall clock time and date at job start Mon Mar 30 2020 17:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47016 * 266.20109 * 3 2 1 5 5 H 1.08998 * 110.53753 * 56.38098 * 4 3 2 6 6 N 1.47307 * 110.60079 * 293.54868 * 4 3 2 7 7 C 1.34526 * 106.62400 * 241.47118 * 6 4 3 8 8 O 1.21542 * 123.77302 * 179.97438 * 7 6 4 9 9 N 1.33796 * 112.45571 * 0.02562 * 7 6 4 10 10 C 1.46496 * 124.17843 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46995 * 90.02242 * 10 9 7 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.34770 * 111.64197 * 0.22740 * 9 7 6 21 21 O 1.21234 * 127.15602 * 179.73716 * 20 9 7 22 22 H 4.44644 * 5.63383 * 179.97438 * 4 1 2 23 23 H 1.09006 * 109.47025 * 146.20660 * 3 2 1 24 24 H 1.08995 * 109.47828 * 26.20032 * 3 2 1 25 25 H 0.97008 * 126.69130 * 61.50784 * 6 4 3 26 26 H 1.09001 * 109.47001 * 330.02541 * 10 9 7 27 27 H 1.09001 * 109.47464 * 210.01981 * 10 9 7 28 28 H 1.09001 * 109.47002 * 60.00299 * 11 10 9 29 29 H 1.08993 * 109.46955 * 299.99862 * 11 10 9 30 30 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1559 0.0965 1.4394 5 1 2.7509 -0.7155 2.0434 6 7 2.8087 1.4021 2.0264 7 6 3.9703 2.0083 2.3310 8 8 4.0448 3.1116 2.8355 9 7 5.0346 1.2614 2.0156 10 6 6.4232 1.6727 2.2361 11 6 6.8758 1.2169 3.6248 12 6 8.3044 1.6395 3.8515 13 1 8.8363 2.1796 3.0821 14 6 8.9321 1.3376 5.0413 15 7 8.2843 0.6805 5.9783 16 14 10.7028 1.8621 5.3225 17 1 11.1421 1.4196 6.6704 18 1 10.8017 3.3409 5.2299 19 1 11.5725 1.2422 4.2907 20 6 4.6715 0.0862 1.4649 21 8 5.4045 -0.7965 1.0732 22 1 -1.0500 0.0002 0.0000 23 1 3.0089 0.8549 -0.5716 24 1 3.0098 -0.9212 -0.4537 25 1 1.9163 1.7557 2.1666 26 1 6.4957 2.7582 2.1684 27 1 7.0616 1.2180 1.4786 28 1 6.8033 0.1314 3.6925 29 1 6.2375 1.6717 4.3823 30 1 7.3647 0.4085 5.8325 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756645410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:51 Heat of formation + Delta-G solvation = -1.013483 kcal Electronic energy + Delta-G solvation = -16190.128401 eV Core-core repulsion = 13373.653057 eV Total energy + Delta-G solvation = -2816.475344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.22768 -38.37086 -36.54350 -35.46796 -34.02234 -32.99245 -30.11296 -29.73729 -25.64694 -24.47556 -22.50950 -21.88443 -20.07677 -18.50108 -17.92701 -17.11324 -16.59620 -16.14303 -15.48684 -15.14088 -14.77848 -14.03456 -13.82989 -13.70225 -13.64217 -13.13456 -12.93383 -12.53252 -11.91337 -10.92256 -10.86166 -10.66522 -10.63324 -10.51262 -10.28887 -10.08487 -9.92809 -9.50405 -9.16553 -8.63227 -8.35585 -6.40090 -4.10192 1.71812 2.35605 2.48556 2.57425 3.18120 3.26451 3.45195 3.47534 3.65855 3.85211 4.21913 4.50164 4.54681 4.68731 5.22356 5.32723 5.38902 5.45947 5.63073 5.89327 6.01487 6.15222 6.48209 6.81613 7.18981 7.25074 7.26706 7.47162 7.55828 8.07723 8.32876 8.40349 8.81619 9.62639 11.00894 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.050687 B = 0.005384 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.282722 B = 5199.036242 C = 5425.732055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.189 4.189 3 C -0.009 4.009 4 C 0.097 3.903 5 H 0.129 0.871 6 N -0.729 5.729 7 C 0.700 3.300 8 O -0.537 6.537 9 N -0.568 5.568 10 C 0.127 3.873 11 C -0.001 4.001 12 C -0.603 4.603 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.908 5.908 16 Si 1.073 2.927 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.524 3.476 21 O -0.464 6.464 22 H 0.219 0.781 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.436 0.564 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -1.756 -11.778 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C -0.047 4.047 4 C -0.012 4.012 5 H 0.146 0.854 6 N -0.394 5.394 7 C 0.401 3.599 8 O -0.409 6.409 9 N -0.314 5.314 10 C 0.008 3.992 11 C -0.039 4.039 12 C -0.642 4.642 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.544 5.544 16 Si 0.900 3.100 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.213 1.213 20 C 0.309 3.691 21 O -0.333 6.333 22 H 0.236 0.764 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.280 0.720 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.378 -1.648 -10.597 16.378 hybrid contribution -1.990 0.134 -1.026 2.243 sum -14.368 -1.514 -11.623 18.542 Atomic orbital electron populations 1.24927 0.95882 1.00897 0.99408 1.22671 0.93950 1.00729 1.01520 1.18833 0.85808 1.05496 0.94529 1.22021 0.93697 0.89108 0.96383 0.85400 1.45566 1.08142 1.18624 1.67107 1.15959 0.81012 0.84134 0.78812 1.91013 1.85293 1.18181 1.46444 1.46742 1.10152 1.18127 1.56335 1.22067 0.74413 1.01149 1.01577 1.19544 0.97629 0.96381 0.90370 1.21828 0.97000 1.40970 1.04356 0.92826 1.25892 1.05909 0.94476 0.92366 1.70779 1.12948 1.35686 1.34950 0.83497 0.74110 0.76133 0.76245 1.20718 1.21294 1.21306 1.20582 0.89886 0.81908 0.76684 1.90808 1.59677 1.37710 1.45130 0.76399 0.88355 0.86784 0.72000 0.89438 0.89582 0.96928 0.96648 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.64 13.13 -37.12 -0.49 -2.13 16 3 C -0.01 -0.08 5.46 -29.52 -0.16 -0.24 16 4 C 0.10 1.08 3.67 -68.20 -0.25 0.83 16 5 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 6 N -0.73 -8.90 6.02 -59.19 -0.36 -9.26 16 7 C 0.70 12.18 8.62 -88.02 -0.76 11.42 16 8 O -0.54 -11.38 17.48 5.33 0.09 -11.29 16 9 N -0.57 -10.37 2.60 -120.72 -0.31 -10.68 16 10 C 0.13 2.72 5.64 -4.04 -0.02 2.69 16 11 C 0.00 -0.04 4.61 -27.88 -0.13 -0.17 16 12 C -0.60 -17.37 9.11 -34.44 -0.31 -17.68 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 14 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 15 N -0.91 -28.35 13.65 55.43 0.76 -27.59 16 16 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.52 8.32 7.64 -10.55 -0.08 8.24 16 21 O -0.46 -8.52 17.75 5.60 0.10 -8.42 16 22 H 0.22 0.91 7.80 -54.09 -0.42 0.49 16 23 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.44 4.27 8.96 -40.82 -0.37 3.91 16 26 H 0.09 1.87 7.86 -51.93 -0.41 1.46 16 27 H 0.09 1.78 8.00 -51.93 -0.42 1.36 16 28 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 29 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 30 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -35.00 279.35 -5.53 -40.54 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.21 Total: -0.44 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.73 Total: 2.52 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.09 Total: -47.53 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.19 Total: -19.72 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -35.00 -5.53 -40.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756645410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.525 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds