Wall clock time and date at job start Mon Mar 30 2020 17:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47180 * 2 1 4 4 C 1.38525 * 120.01002 * 125.00119 * 3 2 1 5 5 C 1.40170 * 117.80629 * 180.02562 * 4 3 2 6 6 C 1.47949 * 121.15470 * 180.02562 * 5 4 3 7 7 O 1.21465 * 119.99891 * 174.03356 * 6 5 4 8 8 O 1.34694 * 119.99999 * 354.03400 * 6 5 4 9 9 C 1.34827 * 117.00002 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99615 * 0.02562 * 9 8 6 11 11 C 1.38844 * 119.99743 * 179.97438 * 9 8 6 12 12 N 1.31385 * 120.00411 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99914 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46920 * 60.00373 * 13 11 9 15 15 H 1.48495 * 109.47601 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47183 * 300.00668 * 13 11 9 17 17 C 1.39864 * 117.68899 * 0.02562 * 5 4 3 18 18 C 1.50693 * 120.17943 * 179.97438 * 17 5 4 19 19 N 1.31879 * 119.63828 * 0.24970 * 17 5 4 20 20 N 1.28274 * 122.33830 * 359.46611 * 19 17 5 21 21 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46664 * 300.00005 * 1 2 3 23 23 H 1.08998 * 109.46948 * 59.99903 * 1 2 3 24 24 H 1.09000 * 109.46664 * 239.99995 * 2 1 3 25 25 H 1.08998 * 109.46948 * 120.00097 * 2 1 3 26 26 H 1.08000 * 121.09182 * 0.02562 * 4 3 2 27 27 H 0.97004 * 119.99962 * 179.97438 * 12 11 9 28 28 H 1.09011 * 109.47043 * 83.42117 * 18 17 5 29 29 H 1.08996 * 109.47583 * 203.41766 * 18 17 5 30 30 H 1.08997 * 109.47152 * 323.42615 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9120 1.8446 0.9826 5 6 3.3493 3.1756 0.9388 6 6 4.2892 3.7062 1.9507 7 8 4.7390 4.8283 1.8325 8 8 4.6460 2.9450 3.0031 9 6 5.5060 3.4883 3.8879 10 1 5.8760 4.4914 3.7351 11 6 5.9151 2.7586 4.9961 12 7 5.4645 1.5386 5.1822 13 14 7.1061 3.5116 6.2224 14 1 6.5077 4.7405 6.8030 15 1 7.3832 2.5356 7.3068 16 1 8.3747 3.8574 5.5322 17 6 2.8663 3.9847 -0.0948 18 6 3.2993 5.4246 -0.1952 19 7 2.0257 3.4821 -0.9780 20 7 1.6336 2.2615 -0.9347 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2497 1.1716 1.7569 27 1 5.7507 1.0287 5.9563 28 1 4.2590 5.4805 -0.7093 29 1 2.5541 5.9900 -0.7545 30 1 3.3984 5.8448 0.8057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759725210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:55 Heat of formation + Delta-G solvation = -34.252055 kcal Electronic energy + Delta-G solvation = -16199.294692 eV Core-core repulsion = 13381.378016 eV Total energy + Delta-G solvation = -2817.916676 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91340 -38.99845 -35.76948 -34.80400 -33.09528 -32.42772 -31.29080 -27.68928 -26.17590 -24.99616 -23.14912 -22.38123 -20.38157 -18.03483 -17.17432 -16.86979 -15.49655 -15.32744 -15.07803 -14.54017 -14.45762 -14.32597 -13.86790 -12.99222 -12.78229 -12.61219 -12.15116 -12.01337 -11.74717 -11.69682 -11.38590 -11.13877 -10.66884 -10.60964 -10.55117 -10.08174 -9.76564 -9.74939 -9.19847 -8.92592 -8.80344 -6.68636 -4.29306 0.71116 1.15788 3.00903 3.05524 3.09868 3.32563 3.67071 3.99317 4.16172 4.22220 4.59738 4.79914 4.92974 5.03832 5.17589 5.29815 5.38749 5.67855 5.80217 5.88476 5.95173 6.03831 6.12465 6.13730 6.26416 6.43015 6.54674 6.75947 7.15672 7.68422 8.44988 8.79030 8.96879 9.55431 10.47879 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.006992 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.000843 B = 4003.390084 C = 4905.510825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C 0.054 3.946 4 C -0.074 4.074 5 C -0.084 4.084 6 C 0.426 3.574 7 O -0.538 6.538 8 O -0.197 6.197 9 C -0.371 4.371 10 H 0.102 0.898 11 C 0.043 3.957 12 N -0.850 5.850 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.267 1.267 17 C 0.107 3.893 18 C -0.100 4.100 19 N -0.251 5.251 20 N -0.238 5.238 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.164 0.836 27 H 0.275 0.725 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 -2.134 -5.575 7.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.091 4.091 4 C -0.103 4.103 5 C -0.097 4.097 6 C 0.274 3.726 7 O -0.437 6.437 8 O -0.103 6.103 9 C -0.447 4.447 10 H 0.120 0.880 11 C -0.163 4.163 12 N -0.485 5.485 13 Si 0.773 3.227 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.192 1.192 17 C -0.038 4.038 18 C -0.158 4.158 19 N -0.094 5.094 20 N -0.081 5.081 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.181 0.819 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.800 -1.794 -6.771 9.094 hybrid contribution 1.486 -0.040 1.928 2.435 sum -4.314 -1.834 -4.843 6.740 Atomic orbital electron populations 1.21697 0.94003 1.01804 1.02746 1.20413 0.97023 0.89317 1.03715 1.22767 0.95248 0.98490 0.92579 1.22774 0.93674 0.95709 0.98157 1.20479 0.98337 0.94674 0.96178 1.20242 0.83938 0.84989 0.83440 1.90595 1.55880 1.20101 1.77126 1.83848 1.53768 1.43181 1.29477 1.21385 1.20970 1.01356 1.01001 0.88029 1.25470 0.98012 0.95487 0.97375 1.69942 1.40960 1.09182 1.28442 0.85637 0.79609 0.78701 0.78718 1.19165 1.20124 1.19171 1.23035 0.92156 0.98709 0.89851 1.20910 1.01202 0.88152 1.05531 1.72959 1.09700 1.05548 1.21146 1.72602 1.18178 0.97621 1.19662 0.92132 0.92758 0.91584 0.89702 0.89662 0.81862 0.91458 0.89855 0.91260 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.77 37.16 0.36 -1.24 16 2 C -0.07 -0.80 6.35 -27.89 -0.18 -0.98 16 3 C 0.05 0.87 6.25 -82.46 -0.52 0.36 16 4 C -0.07 -1.35 9.41 -38.75 -0.36 -1.72 16 5 C -0.08 -1.74 5.92 -104.59 -0.62 -2.36 16 6 C 0.43 10.35 7.80 34.71 0.27 10.62 16 7 O -0.54 -13.55 12.78 -19.24 -0.25 -13.79 16 8 O -0.20 -5.35 9.16 -21.46 -0.20 -5.54 16 9 C -0.37 -10.32 9.65 30.96 0.30 -10.02 16 10 H 0.10 2.81 6.86 -52.49 -0.36 2.45 16 11 C 0.04 1.13 5.50 -17.52 -0.10 1.03 16 12 N -0.85 -23.17 13.67 55.49 0.76 -22.41 16 13 Si 0.95 19.92 29.55 -169.99 -5.02 14.89 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 15 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 C 0.11 2.05 6.91 -81.97 -0.57 1.48 16 18 C -0.10 -1.69 8.96 36.00 0.32 -1.37 16 19 N -0.25 -4.75 11.42 33.83 0.39 -4.36 16 20 N -0.24 -4.25 11.03 33.57 0.37 -3.88 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 26 H 0.16 2.91 7.72 -52.49 -0.41 2.50 16 27 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.95 5.96 -51.93 -0.31 1.64 16 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -30.11 270.89 -4.10 -34.21 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -3.15 Total: 1.01 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.08 Total: -4.19 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 1.51 Total: -30.66 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.44 Total: -19.34 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.11 -4.10 -34.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759725210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.046 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds