Wall clock time and date at job start Mon Mar 30 2020 17:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47180 * 2 1 4 4 C 1.38525 * 120.01002 * 125.00119 * 3 2 1 5 5 C 1.40170 * 117.80629 * 180.02562 * 4 3 2 6 6 C 1.47949 * 121.15470 * 180.02562 * 5 4 3 7 7 O 1.21465 * 119.99891 * 174.03356 * 6 5 4 8 8 O 1.34694 * 119.99999 * 354.03400 * 6 5 4 9 9 C 1.34827 * 117.00002 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99615 * 0.02562 * 9 8 6 11 11 C 1.38844 * 119.99743 * 179.97438 * 9 8 6 12 12 N 1.31385 * 120.00411 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99914 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46920 * 60.00373 * 13 11 9 15 15 H 1.48495 * 109.47601 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47183 * 300.00668 * 13 11 9 17 17 C 1.39864 * 117.68899 * 0.02562 * 5 4 3 18 18 C 1.50693 * 120.17943 * 179.97438 * 17 5 4 19 19 N 1.31879 * 119.63828 * 0.24970 * 17 5 4 20 20 N 1.28274 * 122.33830 * 359.46611 * 19 17 5 21 21 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46664 * 300.00005 * 1 2 3 23 23 H 1.08998 * 109.46948 * 59.99903 * 1 2 3 24 24 H 1.09000 * 109.46664 * 239.99995 * 2 1 3 25 25 H 1.08998 * 109.46948 * 120.00097 * 2 1 3 26 26 H 1.08000 * 121.09182 * 0.02562 * 4 3 2 27 27 H 0.97004 * 119.99962 * 179.97438 * 12 11 9 28 28 H 1.09011 * 109.47043 * 83.42117 * 18 17 5 29 29 H 1.08996 * 109.47583 * 203.41766 * 18 17 5 30 30 H 1.08997 * 109.47152 * 323.42615 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9120 1.8446 0.9826 5 6 3.3493 3.1756 0.9388 6 6 4.2892 3.7062 1.9507 7 8 4.7390 4.8283 1.8325 8 8 4.6460 2.9450 3.0031 9 6 5.5060 3.4883 3.8879 10 1 5.8760 4.4914 3.7351 11 6 5.9151 2.7586 4.9961 12 7 5.4645 1.5386 5.1822 13 14 7.1061 3.5116 6.2224 14 1 6.5077 4.7405 6.8030 15 1 7.3832 2.5356 7.3068 16 1 8.3747 3.8574 5.5322 17 6 2.8663 3.9847 -0.0948 18 6 3.2993 5.4246 -0.1952 19 7 2.0257 3.4821 -0.9780 20 7 1.6336 2.2615 -0.9347 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2497 1.1716 1.7569 27 1 5.7507 1.0287 5.9563 28 1 4.2590 5.4805 -0.7093 29 1 2.5541 5.9900 -0.7545 30 1 3.3984 5.8448 0.8057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759725210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:54 Heat of formation + Delta-G solvation = -52.864902 kcal Electronic energy + Delta-G solvation = -16200.101806 eV Core-core repulsion = 13381.378016 eV Total energy + Delta-G solvation = -2818.723790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.44588 -40.90560 -37.63764 -36.14596 -34.73081 -34.34900 -32.55302 -29.07665 -27.97931 -26.65602 -24.42982 -23.88502 -22.01359 -20.03219 -18.89439 -18.47185 -17.18737 -16.98351 -16.70408 -16.23697 -16.12876 -15.68065 -14.99278 -14.62998 -14.36096 -13.97603 -13.74876 -13.43586 -13.19197 -13.11769 -12.73973 -12.45072 -12.22346 -12.14610 -12.13191 -11.81881 -11.42418 -11.35416 -10.77319 -10.67571 -10.54013 -8.64230 -6.39852 -0.86605 -0.29365 1.32341 1.33966 1.49813 1.62379 1.95392 2.39433 2.43374 2.81602 2.93644 3.16787 3.30715 3.65167 3.93544 4.11461 4.34439 4.38653 4.54958 4.59758 4.66312 4.70365 4.93222 5.04144 5.05381 5.08002 5.18561 5.30025 5.42102 5.71455 6.46449 6.79701 7.48540 7.56619 8.54952 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.006992 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.000843 B = 4003.390084 C = 4905.510825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C 0.064 3.936 4 C -0.064 4.064 5 C -0.111 4.111 6 C 0.432 3.568 7 O -0.550 6.550 8 O -0.222 6.222 9 C -0.417 4.417 10 H 0.091 0.909 11 C 0.002 3.998 12 N -0.888 5.888 13 Si 1.019 2.981 14 H -0.261 1.261 15 H -0.259 1.259 16 H -0.261 1.261 17 C 0.107 3.893 18 C -0.096 4.096 19 N -0.257 5.257 20 N -0.238 5.238 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.166 0.834 27 H 0.283 0.717 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -2.886 -5.955 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.080 4.080 4 C -0.093 4.093 5 C -0.123 4.123 6 C 0.280 3.720 7 O -0.448 6.448 8 O -0.129 6.129 9 C -0.492 4.492 10 H 0.108 0.892 11 C -0.200 4.200 12 N -0.524 5.524 13 Si 0.838 3.162 14 H -0.185 1.185 15 H -0.183 1.183 16 H -0.185 1.185 17 C -0.038 4.038 18 C -0.154 4.154 19 N -0.099 5.099 20 N -0.081 5.081 21 H 0.107 0.893 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.184 0.816 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.249 -2.541 -7.177 9.850 hybrid contribution 1.472 0.154 1.851 2.370 sum -4.777 -2.387 -5.327 7.543 Atomic orbital electron populations 1.21694 0.92906 1.03439 1.01915 1.20644 0.97831 0.86525 1.05520 1.23343 0.93747 1.00104 0.90841 1.22950 0.93200 0.94757 0.98404 1.20401 0.99255 0.96253 0.96408 1.20919 0.83347 0.84640 0.83104 1.90572 1.56207 1.20694 1.77351 1.83862 1.54663 1.43958 1.30429 1.21572 1.23193 1.01747 1.02722 0.89154 1.26585 0.99174 0.95788 0.98470 1.70009 1.42410 1.10449 1.29548 0.84652 0.77085 0.78248 0.76252 1.18510 1.18322 1.18492 1.23261 0.91855 0.99396 0.89252 1.20889 1.02363 0.87253 1.04855 1.72984 1.09636 1.06190 1.21054 1.72585 1.17939 0.97527 1.20002 0.89340 0.93658 0.92336 0.87610 0.88100 0.81600 0.90704 0.89277 0.88532 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.77 71.98 0.70 -2.02 16 2 C -0.07 -1.42 6.35 29.85 0.19 -1.23 16 3 C 0.06 1.97 6.25 42.62 0.27 2.24 16 4 C -0.06 -2.28 9.41 22.81 0.21 -2.07 16 5 C -0.11 -4.59 5.92 -19.84 -0.12 -4.71 16 6 C 0.43 21.55 7.80 70.40 0.55 22.10 16 7 O -0.55 -28.46 12.78 19.95 0.26 -28.20 16 8 O -0.22 -12.48 9.16 12.01 0.11 -12.37 16 9 C -0.42 -23.94 9.65 67.97 0.66 -23.28 16 10 H 0.09 5.20 6.86 -2.91 -0.02 5.18 16 11 C 0.00 0.12 5.50 84.90 0.47 0.59 16 12 N -0.89 -49.07 13.67 21.64 0.30 -48.78 16 13 Si 1.02 40.70 29.55 68.60 2.03 42.73 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 15 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 16 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 17 C 0.11 4.01 6.91 42.94 0.30 4.31 16 18 C -0.10 -3.18 8.96 71.23 0.64 -2.55 16 19 N -0.26 -9.32 11.42 -46.89 -0.54 -9.86 16 20 N -0.24 -8.07 11.03 -47.70 -0.53 -8.60 16 21 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 24 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.10 1.89 7.92 -2.39 -0.02 1.87 16 26 H 0.17 5.86 7.72 -2.91 -0.02 5.84 16 27 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.09 3.23 5.96 -2.39 -0.01 3.22 16 Total: -1.00 -65.68 270.89 6.65 -59.04 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.16 Total: 12.66 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 3.86 Total: -6.63 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.77 Total: -67.23 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: 0.37 Total: -40.57 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.68 6.65 -59.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759725210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.171 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds