Wall clock time and date at job start Mon Mar 30 2020 17:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34156 * 125.66093 * 2 1 4 4 H 0.97007 * 125.37125 * 359.97438 * 3 2 1 5 5 C 1.38003 * 109.26039 * 179.83622 * 3 2 1 6 6 C 1.41538 * 125.98394 * 180.15212 * 5 3 2 7 7 O 1.21420 * 119.99999 * 180.31886 * 6 5 3 8 8 C 1.37843 * 108.03691 * 0.42919 * 5 3 2 9 9 C 1.38410 * 125.66221 * 180.30712 * 2 1 3 10 10 C 1.47348 * 126.40164 * 0.03562 * 9 2 1 11 11 O 1.21628 * 120.00088 * 328.64948 * 10 9 2 12 12 N 1.34780 * 119.99868 * 148.64895 * 10 9 2 13 13 C 1.46497 * 119.99838 * 356.07206 * 12 10 9 14 14 C 1.36975 * 119.99910 * 176.07265 * 12 10 9 15 15 H 1.07998 * 119.99752 * 340.72068 * 14 12 10 16 16 C 1.38980 * 119.99944 * 160.71717 * 14 12 10 17 17 N 1.31408 * 119.99806 * 59.26151 * 16 14 12 18 18 Si 1.86798 * 119.99998 * 239.25868 * 16 14 12 19 19 H 1.48497 * 109.47020 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46931 * 119.99973 * 18 16 14 21 21 H 1.48495 * 109.47175 * 240.00255 * 18 16 14 22 22 H 1.09001 * 109.47027 * 269.68925 * 1 2 3 23 23 H 1.09003 * 109.47292 * 149.69430 * 1 2 3 24 24 H 1.09002 * 109.47410 * 29.69101 * 1 2 3 25 25 H 1.08002 * 120.00096 * 0.32562 * 6 5 3 26 26 H 1.07997 * 126.58780 * 179.74391 * 8 5 3 27 27 H 1.08998 * 109.47329 * 67.12786 * 13 12 10 28 28 H 1.09010 * 109.47021 * 187.12667 * 13 12 10 29 29 H 1.09001 * 109.47545 * 307.12230 * 13 12 10 30 30 H 0.96995 * 120.00179 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2891 1.0900 0.0000 4 1 1.9737 2.0074 -0.0004 5 6 3.6129 0.7003 0.0037 6 6 4.7341 1.5642 0.0079 7 8 5.8568 1.1019 0.0051 8 6 3.6523 -0.6775 -0.0037 9 6 2.3139 -1.1245 -0.0060 10 6 1.8601 -2.5264 -0.0143 11 8 0.8167 -2.8311 0.5315 12 7 2.6013 -3.4710 -0.6266 13 6 3.8130 -3.0916 -1.3574 14 6 2.2215 -4.7856 -0.5657 15 1 1.5365 -5.1148 0.2017 16 6 2.7176 -5.6959 -1.4913 17 7 4.0132 -5.8921 -1.5904 18 14 1.5428 -6.6404 -2.5946 19 1 0.1461 -6.2401 -2.2879 20 1 1.8444 -6.3340 -4.0160 21 1 1.7041 -8.0973 -2.3571 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3634 -0.8872 -0.5186 24 1 -0.3634 0.8927 -0.5090 25 1 4.5909 2.6347 0.0137 26 1 4.5375 -1.2962 -0.0071 27 1 4.5615 -2.7256 -0.6546 28 1 4.2053 -3.9604 -1.8862 29 1 3.5739 -2.3069 -2.0751 30 1 4.3595 -6.5276 -2.2362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773900566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:05 Heat of formation + Delta-G solvation = -0.876537 kcal Electronic energy + Delta-G solvation = -16483.782067 eV Core-core repulsion = 13667.312662 eV Total energy + Delta-G solvation = -2816.469405 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23143 -38.48664 -37.77113 -34.63658 -32.24055 -31.42261 -30.87156 -27.33997 -26.31453 -24.97663 -23.00967 -21.46253 -19.97322 -18.33699 -17.56218 -16.82232 -15.41760 -15.17162 -14.90176 -14.66205 -14.38245 -13.91802 -13.91278 -13.54059 -13.12847 -12.57871 -12.35228 -12.16148 -11.80874 -11.68664 -11.52126 -11.12109 -10.68366 -10.40006 -10.09925 -9.81063 -8.71282 -8.47609 -8.31066 -7.89257 -7.81558 -6.85495 -3.55816 1.20673 2.48092 3.12007 3.19022 3.31891 3.33311 3.46289 4.12709 4.24154 4.46955 4.79126 5.05805 5.10251 5.24778 5.49459 5.64856 5.80305 5.87906 6.18943 6.23716 6.36413 6.48925 6.67617 6.93586 7.01954 7.14848 7.44312 7.52035 7.63066 8.28298 8.50952 9.22573 9.46840 10.14398 10.24013 Molecular weight = 236.09amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.007708 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.073479 B = 3631.662012 C = 4348.199481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.113 3.887 3 N -0.527 5.527 4 H 0.415 0.585 5 C -0.141 4.141 6 C 0.405 3.595 7 O -0.471 6.471 8 C -0.063 4.063 9 C -0.192 4.192 10 C 0.495 3.505 11 O -0.594 6.594 12 N -0.424 5.424 13 C 0.056 3.944 14 C -0.372 4.372 15 H 0.110 0.890 16 C 0.092 3.908 17 N -0.783 5.783 18 Si 0.848 3.152 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.282 1.282 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.159 0.841 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.034 0.966 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 13.640 -0.813 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 N -0.123 5.123 4 H 0.253 0.747 5 C -0.248 4.248 6 C 0.268 3.732 7 O -0.346 6.346 8 C -0.089 4.089 9 C -0.201 4.201 10 C 0.286 3.714 11 O -0.482 6.482 12 N -0.140 5.140 13 C -0.088 4.088 14 C -0.495 4.495 15 H 0.127 0.873 16 C -0.122 4.122 17 N -0.414 5.414 18 Si 0.670 3.330 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.208 1.208 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.176 0.824 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.053 0.947 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.260 13.285 -0.640 13.360 hybrid contribution -0.518 0.008 -0.677 0.852 sum -1.778 13.292 -1.317 13.475 Atomic orbital electron populations 1.20462 0.86776 1.03477 1.03613 1.20886 0.93861 0.85398 1.00877 1.41522 1.05568 1.08200 1.57029 0.74741 1.20246 0.84958 0.95938 1.23615 1.21396 0.86401 0.93504 0.71942 1.90604 1.25794 1.80788 1.37461 1.22231 0.97732 0.92241 0.96717 1.19967 0.92402 0.94267 1.13456 1.16776 0.85955 0.82951 0.85747 1.90569 1.25203 1.81884 1.50562 1.43388 1.20140 1.06142 1.44357 1.22473 0.87990 1.02212 0.96146 1.19117 1.30531 0.83354 1.16482 0.87261 1.25192 0.94470 0.95745 0.96762 1.70539 1.14521 1.28297 1.27996 0.87192 0.85393 0.78893 0.81522 1.18457 1.20277 1.20819 0.90079 0.88493 0.92160 0.89748 0.82393 0.94116 0.87378 0.94749 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.77 36.00 0.35 -0.82 16 2 C 0.11 1.81 7.19 -81.52 -0.59 1.23 16 3 N -0.53 -6.49 6.02 -6.60 -0.04 -6.53 16 4 H 0.42 3.14 8.96 -40.82 -0.37 2.77 16 5 C -0.14 -2.07 6.89 -83.97 -0.58 -2.65 16 6 C 0.41 5.20 11.53 31.99 0.37 5.56 16 7 O -0.47 -7.97 17.61 5.44 0.10 -7.88 16 8 C -0.06 -1.17 8.77 -38.64 -0.34 -1.50 16 9 C -0.19 -3.93 5.54 -105.04 -0.58 -4.51 16 10 C 0.50 12.59 7.37 -12.55 -0.09 12.50 16 11 O -0.59 -16.63 15.52 5.25 0.08 -16.55 16 12 N -0.42 -11.17 3.02 -123.44 -0.37 -11.55 16 13 C 0.06 1.28 8.73 59.85 0.52 1.80 16 14 C -0.37 -10.53 9.11 -14.98 -0.14 -10.67 16 15 H 0.11 3.31 7.58 -52.49 -0.40 2.91 16 16 C 0.09 2.40 4.63 -17.46 -0.08 2.32 16 17 N -0.78 -20.16 11.48 55.50 0.64 -19.53 16 18 Si 0.85 19.57 29.69 -169.99 -5.05 14.53 16 19 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.10 1.59 7.37 -51.93 -0.38 1.21 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.68 8.06 -52.49 -0.42 0.25 16 26 H 0.16 3.05 5.54 -52.49 -0.29 2.76 16 27 H 0.04 0.88 5.53 -51.93 -0.29 0.60 16 28 H 0.11 2.64 4.82 -51.92 -0.25 2.39 16 29 H 0.03 0.72 7.65 -51.93 -0.40 0.33 16 30 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 264.29 15.07 3.98 3.98 Total: -1.00 -33.27 264.29 -4.59 -37.85 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.78 Total: 2.40 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.15 Total: 3.26 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.22 Total: -37.60 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.18 Total: -24.43 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.05 Total: 14.53 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.27 -4.59 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773900566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.978 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds