Wall clock time and date at job start Mon Mar 30 2020 17:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38817 * 120.34010 * 2 1 4 4 C 1.38389 * 118.52161 * 180.02562 * 3 2 1 5 5 C 1.39013 * 119.11102 * 0.27872 * 4 3 2 6 6 N 1.39259 * 119.70520 * 179.69613 * 5 4 3 7 7 C 1.46501 * 119.99480 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.46895 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46964 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46984 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00097 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00090 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99772 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00140 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46905 * 90.00429 * 14 12 10 16 16 H 1.48498 * 109.47040 * 210.00278 * 14 12 10 17 17 H 1.48499 * 109.47040 * 330.00510 * 14 12 10 18 18 N 1.32484 * 120.59277 * 359.40610 * 5 4 3 19 19 O 1.41596 * 119.19048 * 180.31070 * 18 5 4 20 20 C 1.32008 * 121.61103 * 0.62665 * 18 5 4 21 21 H 1.09004 * 109.46870 * 90.00534 * 1 2 3 22 22 H 1.09004 * 109.46978 * 210.00074 * 1 2 3 23 23 H 1.08997 * 109.47496 * 330.00017 * 1 2 3 24 24 H 1.08000 * 120.73832 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.44216 * 179.97438 * 4 3 2 26 26 H 0.96998 * 120.00129 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.47094 * 299.99286 * 7 6 5 28 28 H 1.08996 * 109.47594 * 59.99362 * 7 6 5 29 29 H 1.08996 * 109.47117 * 300.00007 * 8 7 6 30 30 H 1.09004 * 109.47069 * 59.99783 * 8 7 6 31 31 H 1.09004 * 109.47459 * 299.99917 * 9 8 7 32 32 H 1.09004 * 109.47007 * 60.00233 * 9 8 7 33 33 H 0.97004 * 120.00050 * 179.97438 * 13 12 10 34 34 H 1.07996 * 119.57787 * 179.67868 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1980 0.0000 4 6 3.5914 1.1541 -0.0005 5 6 4.2288 -0.0812 -0.0070 6 7 5.6201 -0.1398 -0.0140 7 6 6.4053 1.0970 -0.0140 8 6 7.8964 0.7545 -0.0218 9 6 8.7164 2.0462 -0.0225 10 6 10.1852 1.7088 -0.0295 11 1 10.5021 0.6763 -0.0335 12 6 11.1244 2.7182 -0.0318 13 7 10.7385 3.9754 -0.0274 14 14 12.9450 2.3000 -0.0412 15 1 13.4208 2.1921 -1.4438 16 1 13.7021 3.3694 0.6575 17 1 13.1592 1.0059 0.6550 18 7 3.5245 -1.2034 -0.0007 19 8 4.2044 -2.4454 -0.0008 20 6 2.2045 -1.1918 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.6859 2.1433 -0.0004 25 1 4.1678 2.0674 -0.0010 26 1 6.0693 -0.9995 -0.0181 27 1 6.1619 1.6819 -0.9011 28 1 6.1706 1.6765 0.8788 29 1 8.1395 0.1698 0.8654 30 1 8.1314 0.1748 -0.9145 31 1 8.4733 2.6306 -0.9100 32 1 8.4815 2.6262 0.8701 33 1 11.3992 4.6856 -0.0287 34 1 1.6632 -2.1264 -0.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:37:09 Heat of formation + Delta-G solvation = 39.673106 kcal Electronic energy + Delta-G solvation = -15767.688233 eV Core-core repulsion = 13088.810287 eV Total energy + Delta-G solvation = -2678.877946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30103 -36.84575 -35.06904 -33.78016 -32.18811 -30.83448 -29.68977 -27.66021 -25.83879 -24.34253 -23.16768 -21.85309 -20.51453 -17.98477 -17.61003 -16.39923 -15.93320 -15.78958 -14.79492 -14.68107 -14.62351 -14.48767 -14.35424 -13.55003 -12.88120 -12.38265 -12.31236 -12.26162 -11.95365 -11.65791 -11.02339 -10.88435 -10.81478 -10.62019 -10.36844 -9.84376 -9.57540 -9.21176 -9.06744 -8.70559 -8.42882 -7.65689 -6.08237 -4.10871 0.67847 0.87376 2.43658 3.22311 3.28671 3.35054 3.38550 3.45628 4.34147 4.40856 4.45091 4.53386 4.61865 5.16307 5.20775 5.27100 5.28287 5.39891 5.50156 5.56051 5.61072 5.84942 5.88921 6.00860 6.31838 6.43980 6.65606 6.86209 6.95470 7.44941 7.53689 7.64738 7.69275 7.89986 8.31564 8.95274 9.54015 11.03076 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.056053 B = 0.003920 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.409684 B = 7141.755242 C = 7610.105881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.170 4.170 3 C -0.030 4.030 4 C -0.198 4.198 5 C 0.392 3.608 6 N -0.701 5.701 7 C 0.117 3.883 8 C -0.123 4.123 9 C 0.026 3.974 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.179 5.179 19 O -0.582 6.582 20 C 0.124 3.876 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.161 0.839 26 H 0.420 0.580 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.553 -1.909 0.035 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.175 4.175 3 C -0.055 4.055 4 C -0.223 4.223 5 C 0.162 3.838 6 N -0.333 5.333 7 C -0.006 4.006 8 C -0.161 4.161 9 C -0.011 4.011 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 N 0.128 4.872 19 O -0.630 6.630 20 C -0.022 4.022 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.166 0.834 25 H 0.178 0.822 26 H 0.259 0.741 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.071 -1.979 0.043 20.168 hybrid contribution 1.370 -0.658 -0.023 1.520 sum -18.702 -2.637 0.020 18.887 Atomic orbital electron populations 1.20576 0.88751 1.03368 1.02763 1.20082 0.97768 0.91580 1.08070 1.21428 0.92932 0.98615 0.92561 1.21174 0.95272 0.95625 1.10215 1.18329 0.85740 0.86204 0.93521 1.45353 1.00344 1.11923 1.75649 1.21933 0.92780 0.84349 1.01512 1.21909 0.90240 1.02239 1.01677 1.19029 0.93969 0.90546 0.97589 1.21202 0.91128 0.92871 1.50967 0.92543 1.25011 0.99221 0.95010 0.95125 1.69952 1.34031 0.98806 1.50633 0.86562 0.84981 0.78131 0.78176 1.20601 1.21163 1.19815 1.42846 1.04727 1.08602 1.31030 1.97573 1.70156 1.03282 1.91992 1.22188 0.82668 1.00584 0.96748 0.90871 0.91149 0.90868 0.83375 0.82170 0.74109 0.91383 0.91392 0.92276 0.92285 0.96211 0.96205 0.92897 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.03 36.00 0.36 -0.10 16 2 C -0.17 -1.42 5.90 -104.46 -0.62 -2.04 16 3 C -0.03 -0.24 9.85 -39.31 -0.39 -0.63 16 4 C -0.20 -2.14 9.33 -39.24 -0.37 -2.51 16 5 C 0.39 5.85 7.49 -154.74 -1.16 4.69 16 6 N -0.70 -11.25 5.68 -60.36 -0.34 -11.60 16 7 C 0.12 1.82 4.89 -4.04 -0.02 1.80 16 8 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 N -0.18 -2.96 3.60 -12.36 -0.04 -3.00 16 19 O -0.58 -13.20 19.04 -11.47 -0.22 -13.42 16 20 C 0.12 1.46 10.36 -17.53 -0.18 1.28 16 21 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 22 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 23 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 24 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 25 H 0.16 1.48 6.71 -52.49 -0.35 1.13 16 26 H 0.42 7.44 7.57 -40.82 -0.31 7.13 16 27 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 28 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -35.56 294.33 -8.34 -43.90 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.83 Total: 1.50 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.06 Total: -12.78 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.35 Total: -40.03 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.22 Total: -13.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.56 -8.34 -43.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.573 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds